View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18446_low_9 (Length: 230)

Name: NF18446_low_9

Description: NF18446

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF18446_low_9

[»] chr4 (1 HSPs)

[»] chr1 (1 HSPs)

Target: chr4 (Bit Score: 182; Significance: 2e-98; HSPs: 1)

Name: chr4

Description:

Target: chr4; HSP #1

Raw Score: 182; E-Value: 2e-98

Query Start/End: Original strand, 18 - 214

Target Start/End: Original strand, 44193865 - 44194059

Alignment:

Q	18	aaacgaacatcatctttgttatacaagctcaagaaactgcaattaaaaaattgaatcaataaataattagtgagtaaaagaattaagtgagagagagaat	117	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|
T	44193865	aaacgaacatcatctttgttatacaagctcaagaaactgcaattaaaaaattgaatcaataaataattagtgagtaaaagaattaagtgaga--gagaat	44193962	T

Q	118	agaagaagagtaacacttacttggtgcataagaggccaagggatttttgtttacggtcgtaagtgtggtgtcgtgaaggaggatcggaggaagaagc	214	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|
T	44193963	agaagaagagtaacacttacttggtgcataagaggccaagggatttttgtttacggtcgtaagtgtggtgtcgtgaaggaggatcggaggaggaagc	44194059	T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)

Name: chr1

Description:

Target: chr1; HSP #1

Raw Score: 37; E-Value: 0.000000000005

Query Start/End: Original strand, 138 - 214

Target Start/End: Complemental strand, 52359082 - 52359006

Alignment:

Q	138	ttggtgcataagaggccaagggatttttgtttacggtcgtaagtgtggtgtcgtgaaggaggatcggaggaagaagc	214	Q
		\|\|\|\|\|\|\|\| \|\|\|\|\| \|\| \| \|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\| \|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|
T	52359082	ttggtgcacaagagaccgatggaattttgtttacggtcgtatttgtggcgtcgttaaggaggatcggagaaagaagc	52359006	T

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