View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18447_high_2 (Length: 516)
Name: NF18447_high_2
Description: NF18447
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18447_high_2 |
 | |
|
| [»] chr7 (8 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 480; Significance: 0; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 480; E-Value: 0
Query Start/End: Original strand, 17 - 516
Target Start/End: Original strand, 4903944 - 4904443
Alignment:
| Q |
17 |
ataatgttgtggagttcatcgttgtcgagtttaatcattgttggctttgatttagaacgcttctcttgcaaggaaattccaagttgtgcgagttttggta |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4903944 |
ataatgttgtggagttcatcgttgtcgagtttaatcattgttggctttgatttagaacgcttctcttgcaaggaaattccaagttgtgcgagttttggta |
4904043 |
T |
|
| Q |
117 |
ccattttgttatctaaaagaattgtttgaggctttatatcacagtgaaaaattgcgcgctttgctccgttgtgaagatagtgtagtcctcttgcaactcc |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
4904044 |
ccattttgttatctaaaagaattgtttgaggctttatatcacagtgaaaaattgcgcgctttgctccggtgtgaagatagtgtagtcctcttgcaactcc |
4904143 |
T |
|
| Q |
217 |
aatgcatatttcaagccttttcttccatgagagtgattctagatcccttgaacataagtgatcatagagagaaccattgaacatgtactcatacactata |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4904144 |
aatgcatatttcaagccttttcttccatgagagtgattctagatcccttgaacataagtgatcatagagagaaccattgaacatgtactcatacactata |
4904243 |
T |
|
| Q |
317 |
attttctcatctttctcgtcgcagaatcctattaaagatatcaaattcgggtgatgaagttggctgtggagttcaattaccttcttgaacatccaatcgc |
416 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4904244 |
attttctcatctttctcgtcgcagaatcctattaaagatatcaaattagggtgatgaagttggctgtggagttcaattaccttcttgaacatccaatcgc |
4904343 |
T |
|
| Q |
417 |
caaatctaagtgtcatcctctccaatgctactggatactcattttcaccattatgttttagataacctttgtacactatactgtatagcgattgtccaag |
516 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
4904344 |
ccaatctaagtgtcatcctctccaatgctactggatactcattttcaccattatgtttgagataacctttgtacactatactgtatagtgattgtccaag |
4904443 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 57 - 499
Target Start/End: Original strand, 4907908 - 4908350
Alignment:
| Q |
57 |
ttggctttgatttagaacgcttctcttgcaaggaaattccaagttgtgcgagttttggtaccattttgttatctaaaagaattgtttgaggctttatatc |
156 |
Q |
| |
|
||||||| || |||| | ||||| |||| ||||||| |||||| || | ||||||||||||||| || |||||||||||||| |||||||||||||| || |
|
|
| T |
4907908 |
ttggcttagagttaggaagcttcccttgtaaggaaaatccaagatgcgagagttttggtaccatattcttatctaaaagaatggtttgaggctttatgtc |
4908007 |
T |
|
| Q |
157 |
acagtgaaaaattgcgcgctttgctccgttgtgaagatagtgtagtcctcttgcaactccaatgcatatttcaagccttttcttccatgagagtgattct |
256 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||| |||||||||||| ||||| |||||||||||||||| ||||||||||||||||| | |||||| |
|
|
| T |
4908008 |
acagtgaaaaattgcgcgctttgctccagtgtgaaggtagtgtagtccttttgcagctccaatgcatatttctagccttttcttccatgacaatgattcc |
4908107 |
T |
|
| Q |
257 |
agatcccttgaacataagtgatcatagagagaaccattgaacatgtactcatacactataattttctcatctttctcgtcgcagaatcctattaaagata |
356 |
Q |
| |
|
| |||||| || || ||||||||||||||| |||||| |||||||||||||||| | ||||||||||| || | ||| ||||||||||| ||||| |
|
|
| T |
4908108 |
atatccctcaaaagtaggtgatcatagagagagccattggacatgtactcatacacaagaattttctcatacttgtggtcacagaatcctataaaagacg |
4908207 |
T |
|
| Q |
357 |
tcaaattcgggtgatgaagttggctgtggagttcaattaccttcttgaacatccaatcgccaaatctaagtgtcatcctctccaatgctactggatactc |
456 |
Q |
| |
|
||||||| ||||||||||| |||| || |||||||||| ||||||||||| |||| || |||| || || |||||| | || ||||| |||||| || |
|
|
| T |
4908208 |
tcaaatttgggtgatgaagctggcagttgagttcaatttccttcttgaacttccattcattaaatatatgtatcatccgtttcactgctattggataatc |
4908307 |
T |
|
| Q |
457 |
attttcaccattatgttttagataacctttgtacactatactg |
499 |
Q |
| |
|
| |||||||||||||||| |||||||||||||| |||||||| |
|
|
| T |
4908308 |
agtttcaccattatgtttgagataacctttgtaagctatactg |
4908350 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 57 - 509
Target Start/End: Complemental strand, 5822345 - 5821893
Alignment:
| Q |
57 |
ttggctttgatttagaacgcttctcttgcaaggaaattccaagttgtgcgagttttggtaccattttgttatctaaaagaattgtttgaggctttatatc |
156 |
Q |
| |
|
|||| ||||| |||||| ||||| |||| || |||| |||||| |||| ||||||||||||||| || |||||||||||||| |||||||| ||||| || |
|
|
| T |
5822345 |
ttggatttgacttagaaagcttcccttgtaaagaaaatccaagatgtgagagttttggtaccatattcttatctaaaagaatggtttgaggttttatgtc |
5822246 |
T |
|
| Q |
157 |
acagtgaaaaattgcgcgctttgctccgttgtgaagatagtgtagtcctcttgcaactccaatgcatatttcaagccttttcttccatgagagtgattct |
256 |
Q |
| |
|
||| ||||||| | |||||||| ||| ||||||| ||||||||||| | ||| |||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5822245 |
acaatgaaaaaccgtgcgctttgttccagtgtgaaggtagtgtagtcccttagcagctccgatgcatatttcaagccttttcttccatgagagtgattcc |
5822146 |
T |
|
| Q |
257 |
agatcccttgaacataagtgatcatagagagaaccattgaacatgtactcatacactataattttctcatctttctcgtcgcagaatcctattaaagata |
356 |
Q |
| |
|
| || |||||||| ||| |||||||| | ||| ||||| ||||||||||||||||| | ||||||||||||||| | || ||||||||||| ||||| |
|
|
| T |
5822145 |
atattccttgaacgtaactgatcatacaaagatccatttaacatgtactcatacacaagaattttctcatctttatgatcacagaatcctataaaagacc |
5822046 |
T |
|
| Q |
357 |
tcaaattcgggtgatgaagttggctgtggagttcaattaccttcttgaacatccaatcgccaaatctaagtgtcatcctctccaatgctactggatactc |
456 |
Q |
| |
|
||||||||||||||||||| | ||||||||||||||| ||||||||||| |||| ||| | || | | |||||| || || | ||| ||||||||| |
|
|
| T |
5822045 |
tcaaattcgggtgatgaagcttactgtggagttcaatttccttcttgaacttccattcgtcggataaatttctcatccgcttcacttctattggatactc |
5821946 |
T |
|
| Q |
457 |
attttcaccattatgttttagataacctttgtacactatactgtatagcgatt |
509 |
Q |
| |
|
| |||||||| ||||||| |||||||||||||||||||||||| |||| |||| |
|
|
| T |
5821945 |
agtttcaccactatgtttgagataacctttgtacactatactgaatagtgatt |
5821893 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 65 - 370
Target Start/End: Complemental strand, 4928300 - 4927989
Alignment:
| Q |
65 |
gatttagaacgcttctcttgcaaggaaattccaagttgtgcgagttttggtaccattttgttatctaaaagaattgtttgaggctttatatcacagtgaa |
164 |
Q |
| |
|
||||||||| ||||| |||| ||||| | ||||| ||| | |||||||||| |||| |||||||| |||||||| | || || ||| |||| ||| | |
|
|
| T |
4928300 |
gatttagaaagcttcccttgtaaggataatccaaattgcgagagttttggtgccatattgttatccaaaagaatgttctgtggaattacgtcacggtgga |
4928201 |
T |
|
| Q |
165 |
aaattgcgcgctttgctccgttgtgaagatagtgtagtcctcttgcaactccaatgcatatttcaagccttttcttccatgagagtgattctagatccct |
264 |
Q |
| |
|
|||| | ||||||| ||| |||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||| ||||||||||| | |||||| |
|
|
| T |
4928200 |
aaatcggacgctttgttccagtgtgaagatagtgtagtccttttgcagctccaatgcatatttcaagccttttcttccacgagagtgattccatatccct |
4928101 |
T |
|
| Q |
265 |
tgaacataagtgatcatagagagaaccattgaacatgtactc------atacactataattttctcatctttctcgtcgcagaatcctattaaagatatc |
358 |
Q |
| |
|
|||| ||||||||| | ||||| ||||||| ||| | || |||||| | |||||||| || ||| | ||| || |||||||| ||||||||| |
|
|
| T |
4928100 |
cgaacctaagtgatcttggagagtgccattgaccatttcatcttttttatacacgagaattttcttatttttttggtcacaaaatcctataaaagatatc |
4928001 |
T |
|
| Q |
359 |
aaattcgggtga |
370 |
Q |
| |
|
||||| |||||| |
|
|
| T |
4928000 |
aaatttgggtga |
4927989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 65 - 406
Target Start/End: Complemental strand, 4922059 - 4921711
Alignment:
| Q |
65 |
gatttagaacgcttctcttgcaaggaaattccaagttgtgcgagttttggtaccattttgttatctaaaagaattgtttgaggctttatatcacagtgaa |
164 |
Q |
| |
|
||||| ||| ||||| |||| ||||| | ||||| ||| | |||||||||| |||| |||||||| |||||||| | | |||||||| |||| ||| | |
|
|
| T |
4922059 |
gattttgaaagcttcccttgtaaggataatccaaattgcgagagttttggtgccatattgttatccaaaagaatgctgtaaggctttacgtcacggtgga |
4921960 |
T |
|
| Q |
165 |
aaattgcgcgctttgctccgttgtgaagatagtgtagtcctcttgcaactccaatgcatatttcaagcc-ttttcttccatgagagtgattctagatccc |
263 |
Q |
| |
|
|||| | |||||||||||| ||||||| ||||| |||||| ||||| ||||||||||||||||||||| |||| ||||| |||||||| | |||| |
|
|
| T |
4921959 |
aaatcgggcgctttgctccagtgtgaaggtagtgcagtccttttgcagctccaatgcatatttcaagccttttttttccaagagagtgaaaccgtgtccc |
4921860 |
T |
|
| Q |
264 |
ttgaacataagtgatcatagagagaaccattgaacatgtactc------atacactataattttctcatctttctcgtcgcagaatcctattaaagatat |
357 |
Q |
| |
|
||||||||||||||||| |||||| ||||||| ||| | || |||||| | ||||||||||| ||| | ||| || |||||||| |||||||| |
|
|
| T |
4921859 |
ttgaacataagtgatcacggagagagccattgaccatttcatcttttttatacacgagaattttctcatttttttggtcacaaaatcctatcaaagatat |
4921760 |
T |
|
| Q |
358 |
caaattcgggtgatgaagttggctgtggagttcaattaccttcttgaac |
406 |
Q |
| |
|
|||||| || ||| || |||| ||||||||||||| | ||||||||| |
|
|
| T |
4921759 |
caaatttggatgacaaatctggcagtggagttcaatttcattcttgaac |
4921711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 186 - 245
Target Start/End: Complemental strand, 27539484 - 27539425
Alignment:
| Q |
186 |
tgtgaagatagtgtagtcctcttgcaactccaatgcatatttcaagccttttcttccatg |
245 |
Q |
| |
|
|||||||||||||||| |||| ||| ||||||||||||| |||||||||| |||||||| |
|
|
| T |
27539484 |
tgtgaagatagtgtagacctcgagcagctccaatgcatatctcaagcctttgcttccatg |
27539425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 439 - 501
Target Start/End: Complemental strand, 4921678 - 4921616
Alignment:
| Q |
439 |
caatgctactggatactcattttcaccattatgttttagataacctttgtacactatactgta |
501 |
Q |
| |
|
|||||||| |||||| |||||||||||||||| ||| | ||| |||||||| |||||| |||| |
|
|
| T |
4921678 |
caatgctattggataatcattttcaccattatatttgacatagcctttgtagactatattgta |
4921616 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 439 - 496
Target Start/End: Complemental strand, 4927920 - 4927863
Alignment:
| Q |
439 |
caatgctactggatactcattttcaccattatgttttagataacctttgtacactata |
496 |
Q |
| |
|
|||||||| |||||| |||||||||||||||| ||| | ||| |||||||| |||||| |
|
|
| T |
4927920 |
caatgctattggataatcattttcaccattatatttgacatagcctttgtagactata |
4927863 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 186 - 245
Target Start/End: Complemental strand, 46271722 - 46271663
Alignment:
| Q |
186 |
tgtgaagatagtgtagtcctcttgcaactccaatgcatatttcaagccttttcttccatg |
245 |
Q |
| |
|
|||||||||||||||| |||| ||| ||||||||||||| |||||||||| |||||||| |
|
|
| T |
46271722 |
tgtgaagatagtgtagacctcgagcagctccaatgcatatctcaagcctttgcttccatg |
46271663 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University