View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18447_high_4 (Length: 424)

Name: NF18447_high_4
Description: NF18447
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18447_high_4
NF18447_high_4
[»] chr8 (2 HSPs)
chr8 (18-414)||(8622335-8622731)
chr8 (318-365)||(26975542-26975589)
[»] scaffold0036 (1 HSPs)
scaffold0036 (283-408)||(79714-79839)
[»] chr7 (1 HSPs)
chr7 (283-406)||(22901956-22902079)
[»] chr3 (3 HSPs)
chr3 (288-409)||(47395559-47395680)
chr3 (318-409)||(22495060-22495150)
chr3 (321-404)||(36834131-36834214)
[»] chr2 (5 HSPs)
chr2 (286-406)||(19267474-19267594)
chr2 (286-404)||(40330237-40330355)
chr2 (286-406)||(3777018-3777138)
chr2 (286-404)||(35133190-35133308)
chr2 (315-404)||(41985542-41985631)
[»] scaffold1892 (1 HSPs)
scaffold1892 (318-398)||(374-454)
[»] chr1 (1 HSPs)
chr1 (281-414)||(28562114-28562247)


Alignment Details
Target: chr8 (Bit Score: 329; Significance: 0; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 18 - 414
Target Start/End: Original strand, 8622335 - 8622731
Alignment:
Q  18 ctttttatttcatttcttaacaaaacaattacgacttttaaataaaagtatgcatgaagcactggaatatccaacgcatattatgcaaattgtcaaatta 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  8622335 ctttttatttcatttcttaacaaaacaattacgacttttaaataaaagtatgcatgaagcactggaatatccaacgcatattacgcaaattgtcaaatta 8622434  T
Q  118 tttatttgtattgataaaatgtataaggtttgaaacgaattttaatatacataacaatacagctgttgacttcctacattttacactagagaggggggag 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||  ||   |||||||||||||    
T  8622435 tttatttgtattgataaaatgtataaggtttgaaacgaattttaatatacttaacaatacagctgttgacttcctacattacactagagagaggggggag 8622534  T
Q  218 agagcaatttgtaaataaaaaacaaaattgaataatcacatatttcttaaccaattgcttttatctaattcaagatattaaagatctcttgtcaatgagg 317  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||    
T  8622535 agagcaatttgtaaataaaaaacaaaattgaataatcacatatttcttaaccaattgcttttatctaattcaagatattaaagatctcttgtcaacaagg 8622634  T
Q  318 aatttctccattcaccattgcctcagagaaaggaaccaatatgcagatcttttagccaagctcggtgccacatcgaatgaagaattttctacctatg 414  Q
    ||||||||||||||| ||||||||||||||  ||| |||| |||||||||||||||||| ||||||||||||| |||||||||||||||||| ||||    
T  8622635 aatttctccattcactattgcctcagagaagagaatcaatgtgcagatcttttagccaaactcggtgccacattgaatgaagaattttctacttatg 8622731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 318 - 365
Target Start/End: Original strand, 26975542 - 26975589
Alignment:
Q  318 aatttctccattcaccattgcctcagagaaaggaaccaatatgcagat 365  Q
    |||||| |||||||||||||||| |||||| ||||||||| |||||||    
T  26975542 aatttcaccattcaccattgcctaagagaagggaaccaatgtgcagat 26975589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 54; Significance: 7e-22; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 283 - 408
Target Start/End: Original strand, 79714 - 79839
Alignment:
Q  283 taattcaagatattaaagatctcttgtcaatgaggaatttctccattcaccattgcctcagagaaaggaaccaatatgcagatcttttagccaagctcgg 382  Q
    ||||||||||||| || |||||||| || |  |||||||  ||||| | |||||| ||||||||| ||||||||| ||| ||| || |||| ||||||||    
T  79714 taattcaagatatcaaggatctcttatccacaaggaattcatccatcctccattggctcagagaagggaaccaatgtgctgattttctagctaagctcgg 79813  T
Q  383 tgccacatcgaatgaagaattttcta 408  Q
    |||||||||||||||||| |||||||    
T  79814 tgccacatcgaatgaagagttttcta 79839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 283 - 406
Target Start/End: Complemental strand, 22902079 - 22901956
Alignment:
Q  283 taattcaagatattaaagatctcttgtcaatgaggaatttctccattcaccattgcctcagagaaaggaaccaatatgcagatcttttagccaagctcgg 382  Q
    ||||||||||||| ||||||||||||||    ||||||||| || |||| ||||| || |||||| | ||||| | ||| ||| ||||||| ||||||||    
T  22902079 taattcaagatatcaaagatctcttgtcttcaaggaatttcaccgttcatcattgtctaagagaaggaaaccattgtgctgattttttagctaagctcgg 22901980  T
Q  383 tgccacatcgaatgaagaattttc 406  Q
    |||||  |||||||||||||||||    
T  22901979 tgccatttcgaatgaagaattttc 22901956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 4e-17; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 288 - 409
Target Start/End: Complemental strand, 47395680 - 47395559
Alignment:
Q  288 caagatattaaagatctcttgtcaatgaggaatttctccattcaccattgcctcagagaaaggaaccaatatgcagatcttttagccaagctcggtgcca 387  Q
    ||||||||||| |||||||| || |  || ||||||||| || | || || ||||||||| |||| |||| ||||||  ||||||| |||||||| ||||    
T  47395680 caagatattaaggatctcttttccacaagcaatttctccgtttatcactgtctcagagaagggaatcaatgtgcagactttttagctaagctcggagcca 47395581  T
Q  388 catcgaatgaagaattttctac 409  Q
    | ||||||||||||||||||||    
T  47395580 cctcgaatgaagaattttctac 47395559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 318 - 409
Target Start/End: Original strand, 22495060 - 22495150
Alignment:
Q  318 aatttctccattcaccattgcctcagagaaaggaaccaatatgcagatcttttagccaagctcggtgccacatcgaatgaagaattttctac 409  Q
    |||| |||||||||||||||  |||||||| ||||| ||| | ||||| ||||||| || ||||||||||| ||||||||||| ||||||||    
T  22495060 aattactccattcaccattgtatcagagaagggaac-aatgtacagattttttagctaaactcggtgccacttcgaatgaagagttttctac 22495150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 321 - 404
Target Start/End: Complemental strand, 36834214 - 36834131
Alignment:
Q  321 ttctccattcaccattgcctcagagaaaggaaccaatatgcagatcttttagccaagctcggtgccacatcgaatgaagaattt 404  Q
    ||||||||||| ||||||||| ||||| |||| |||| ||||||  | || || ||||| || ||||| |||||||||||||||    
T  36834214 ttctccattcatcattgcctcggagaagggaatcaatgtgcagacttcttggctaagcttggagccacctcgaatgaagaattt 36834131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 2e-16; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 286 - 406
Target Start/End: Original strand, 19267474 - 19267594
Alignment:
Q  286 ttcaagatattaaagatctcttgtcaatgaggaatttctccattcaccattgcctcagagaaaggaaccaatatgcagatcttttagccaagctcggtgc 385  Q
    ||||||| || ||||||||||||||    ||||||||| || |||| |||||||| |||||| | ||||| | ||| ||| ||||||| || ||||||||    
T  19267474 ttcaagacatcaaagatctcttgtcctcaaggaatttcaccgttcatcattgcctaagagaaggaaaccagtgtgctgattttttagctaaactcggtgc 19267573  T
Q  386 cacatcgaatgaagaattttc 406  Q
    ||| |||||||||||||||||    
T  19267574 cacttcgaatgaagaattttc 19267594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 286 - 404
Target Start/End: Original strand, 40330237 - 40330355
Alignment:
Q  286 ttcaagatattaaagatctcttgtcaatgaggaatttctccattcaccattgcctcagagaaaggaaccaatatgcagatcttttagccaagctcggtgc 385  Q
    |||||||||| | ||||||||||||    ||||||||| || |||| ||||| || |||||| | ||||||| ||| ||| ||||||| ||||||| |||    
T  40330237 ttcaagatatcagagatctcttgtcctcaaggaatttcaccgttcatcattgtctaagagaaggaaaccaatgtgctgattttttagctaagctcgatgc 40330336  T
Q  386 cacatcgaatgaagaattt 404  Q
    ||| |||||||||||||||    
T  40330337 cacttcgaatgaagaattt 40330355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 286 - 406
Target Start/End: Complemental strand, 3777138 - 3777018
Alignment:
Q  286 ttcaagatattaaagatctcttgtcaatgaggaatttctccattcaccattgcctcagagaaaggaaccaatatgcagatcttttagccaagctcggtgc 385  Q
    ||||||| || | ||||||||||||    ||||||||| || |||| |||||||| |||||| | ||||| | ||| ||| ||||||| || ||||||||    
T  3777138 ttcaagacatcagagatctcttgtcctcaaggaatttcaccgttcatcattgcctaagagaaggaaaccagtgtgctgattttttagctaaactcggtgc 3777039  T
Q  386 cacatcgaatgaagaattttc 406  Q
    ||| |||||||||||||||||    
T  3777038 cacttcgaatgaagaattttc 3777018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 286 - 404
Target Start/End: Complemental strand, 35133308 - 35133190
Alignment:
Q  286 ttcaagatattaaagatctcttgtcaatgaggaatttctccattcaccattgcctcagagaaaggaaccaatatgcagatcttttagccaagctcggtgc 385  Q
    |||||||||| | ||||||||||||    ||||||||| ||||||| ||||| || |||||| | ||||| | ||| ||| ||||||| || ||||||||    
T  35133308 ttcaagatatcagagatctcttgtcctcaaggaatttcaccattcatcattgtctaagagaaggaaaccagtgtgctgattttttagctaaactcggtgc 35133209  T
Q  386 cacatcgaatgaagaattt 404  Q
    ||| |||||||| ||||||    
T  35133208 cacttcgaatgatgaattt 35133190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 315 - 404
Target Start/End: Original strand, 41985542 - 41985631
Alignment:
Q  315 aggaatttctccattcaccattgcctcagagaaaggaaccaatatgcagatcttttagccaagctcggtgccacatcgaatgaagaattt 404  Q
    ||||||||| || |||| ||||| || |||||| | ||||| | ||| ||| ||||||| |||||| ||||||| |||||||||||||||    
T  41985542 aggaatttcaccgttcatcattgtctaagagaaggaaaccagtgtgctgattttttagctaagctcagtgccacctcgaatgaagaattt 41985631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1892 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold1892
Description:

Target: scaffold1892; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 318 - 398
Target Start/End: Complemental strand, 454 - 374
Alignment:
Q  318 aatttctccattcaccattgcctcagagaaaggaaccaatatgcagatcttttagccaagctcggtgccacatcgaatgaa 398  Q
    |||| ||||||||||||||| ||||||||| |||||||||  || ||| ||||||| || ||| |||||||||||||||||    
T  454 aattactccattcaccattgtctcagagaagggaaccaatgggctgattttttagctaaactctgtgccacatcgaatgaa 374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 281 - 414
Target Start/End: Complemental strand, 28562247 - 28562114
Alignment:
Q  281 tctaattcaagatattaaagatctcttgtcaatgaggaatttctccattcaccattgcctcagagaaaggaaccaatatgcagatcttttagccaagctc 380  Q
    |||||||||||| || ||||| ||||| ||||  || ||||||||||| || ||||| || |||||| ||||||||| ||| ||| | || || |||||     
T  28562247 tctaattcaagacatcaaagacctcttttcaacaagaaatttctccatccatcattgtctaagagaagggaaccaatgtgccgatttatttgcaaagcta 28562148  T
Q  381 ggtgccacatcgaatgaagaattttctacctatg 414  Q
    || |||||||| |||||||| ||| |||| ||||    
T  28562147 ggagccacatctaatgaagagtttactacttatg 28562114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University