View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18447_high_6 (Length: 393)
Name: NF18447_high_6
Description: NF18447
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18447_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 354; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 10 - 379
Target Start/End: Original strand, 41037720 - 41038089
Alignment:
| Q |
10 |
gcagagaaccccggacatcaactaactgatggattgatcttctttattgcaccacaagacagtgtgattccacccaactcagaaaatcaatattttggat |
109 |
Q |
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| T |
41037720 |
gcagagaaccccggacatcaactaactgatggattgatcttctttattgcaccacaagacactgtgattccacccaattcagaaagtcaatattttggag |
41037819 |
T |
|
| Q |
110 |
tagttgattcaaagaatgcttacaatcaatttgttggtgtagagtttgacctttatcccaatagttttgatccctatatttaccatattggaatcgatgt |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41037820 |
tagttgattcaaagaatgcttacaatcaatttgttggtgtagagtttgacctttatcccaatagttttgatccctatatttaccatattggaatcgatgt |
41037919 |
T |
|
| Q |
210 |
caactctataatttcgaccaagatcgtggaatgggattgggaatgggtgagtgaatcattgaatcaagtaagtatagcctatgactctccctctaacaca |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41037920 |
caactctataatttcgaccaagatcgtggaatgggattgggaatgggtgagtgaatcattgaatcaagtaagtatagcctatgactctccctctaacaca |
41038019 |
T |
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| Q |
310 |
ttgagtgttgttgtcatacatgccaatggcaaaattgttaccattgctgacatagttgatttgaaaactg |
379 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41038020 |
ttgagtgttgttgtcatacatgccaatggcaaaattgttaccattgctgacatagttgatttgaaaactg |
41038089 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 33 - 375
Target Start/End: Original strand, 41065933 - 41066269
Alignment:
| Q |
33 |
aactgatggattgatcttctttattgcaccacaagacagtgtgattccacccaactcagaaaatcaatattttggattagttgattcaaagaatgcttac |
132 |
Q |
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| T |
41065933 |
aactgatggtttggtcttctttattgcaccacaagacactaagattccacccaactcagaaagtcaatatcttggagtagttgattcaaaaaatacttac |
41066032 |
T |
|
| Q |
133 |
aatcaatttgttggtgtagagtttgacctttatcccaatagttttgatccctatatttaccatattggaatcgatgtcaactctataatttcgaccaaga |
232 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | |||||||||||||||||||||||| ||||||| ||||| |
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| T |
41066033 |
aatcaatttgttggtgtagagtttgacctttatcccaatagttttgatcccaatacgaaacatattggaatcgatgtcaactctttaatttctctcaaga |
41066132 |
T |
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| Q |
233 |
tcgtggaatgggattgggaatgggtgagtgaatcattgaatcaagtaagtatagcctatgactctccctctaacacattgagtgttgttgtcatacatgc |
332 |
Q |
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|||| || ||||||| | ||||| |||||||| | ||||||||| ||| ||||||||| ||||||||||||||||||||||||||| |||| |
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| T |
41066133 |
ccgtgaaa------tgggaattcgcgagtggatcattgactaaagtaagtaaagcatatgactcttcctctaacacattgagtgttgttgtcacttatgc |
41066226 |
T |
|
| Q |
333 |
caatggcaaaattgttaccattgctgacatagttgatttgaaa |
375 |
Q |
| |
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|||||| ||| || |||||||||| | || |||||||||||| |
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| T |
41066227 |
caatggaaaattttctaccattgctcaaatcgttgatttgaaa |
41066269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 33 - 377
Target Start/End: Original strand, 41043785 - 41044123
Alignment:
| Q |
33 |
aactgatggattgatcttctttattgcaccacaagacagtgtgattccacccaactcagaaaatcaatattttggattagttgattcaaagaatgcttac |
132 |
Q |
| |
|
|||||||||| ||||||| ||||||||||||||||||| ||||||||||||| ||||| || | | ||||||| |||||||| | | ||||||||| |
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| T |
41043785 |
aactgatggagtgatcttttttattgcaccacaagacactgtgattccaccccactcaacaagtgcacgttttggagtagttgatatagaaaatgcttac |
41043884 |
T |
|
| Q |
133 |
aatcaatttgttggtgtagagtttgacctttatcccaatagttttgatccctatatttaccatattggaatcgatgtcaactctataatttcgaccaaga |
232 |
Q |
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||||||||||||||||||||||||||||||||| |||||| | |||||||| |||| | ||||||||||||||| |||||||| ||||||||| ||||| |
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| T |
41043885 |
aatcaatttgttggtgtagagtttgacctttataccaatattcttgatcccaatatgaaacatattggaatcgatatcaactctttaatttcgagcaaga |
41043984 |
T |
|
| Q |
233 |
tcgtggaatgggattgggaatgggtgagtgaatcattgaatcaagtaagtatagcctatgactctccctctaacacattgagtgttgttgtcatacatgc |
332 |
Q |
| |
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|||||||| |||||||||||||||| |||||||| |||||||||| |||||||||||| ||||||||| |||||||||||| |||||| ||| |
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| T |
41043985 |
tcgtggaa------tgggaatgggtgagtggatcattgactcaagtaagtgtagcctatgactttccctctaagacattgagtgttcttgtcacttatga |
41044078 |
T |
|
| Q |
333 |
caatggcaaaattgttaccattgctgacatagttgatttgaaaac |
377 |
Q |
| |
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|||| ||||||||| |||| ||||| | ||| ||||||||||||| |
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| T |
41044079 |
caatcgcaaaattgctacccttgctcaaataattgatttgaaaac |
41044123 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 124 - 158
Target Start/End: Original strand, 41074111 - 41074145
Alignment:
| Q |
124 |
aatgcttacaatcaatttgttggtgtagagtttga |
158 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
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| T |
41074111 |
aatgcttacaatcaatttgttggtgtagagtttga |
41074145 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 116 - 172
Target Start/End: Complemental strand, 41047360 - 41047304
Alignment:
| Q |
116 |
attcaaagaatgcttacaatcaatttgttggtgtagagtttgacctttatcccaata |
172 |
Q |
| |
|
||||||| ||||||| ||| ||||||||||||||||||||||| |||| |||||| |
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|
| T |
41047360 |
attcaaataatgcttttaataaatttgttggtgtagagtttgacacttatgccaata |
41047304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 146; Significance: 8e-77; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 146; E-Value: 8e-77
Query Start/End: Original strand, 37 - 377
Target Start/End: Complemental strand, 8496198 - 8495864
Alignment:
| Q |
37 |
gatggattgatcttctttattgcaccacaagacagtgtgattccacccaactcagaaaatcaatattttggattagttgattcaaagaatgcttacaatc |
136 |
Q |
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|
||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||| || | || ||||| ||||||||||||| | | ||||||||| |
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| T |
8496198 |
gatggattggtcttctttattgcaccacaagacactgtgattccacccaactcagaaagtctacatcttggagtagttgattcaaaaagttcttacaatc |
8496099 |
T |
|
| Q |
137 |
aatttgttggtgtagagtttgacctttatcccaatagttttgatccctatatttaccatattggaatcgatgtcaactctataatttcgaccaagatcgt |
236 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||| ||||||| ||||| ||| |
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|
| T |
8496098 |
aatttgttggtgtagagtttgacctttatcccaatagttttgatcccaatacgagacatattggaatcgatgtcaactctttaatttctctcaagaccgt |
8495999 |
T |
|
| Q |
237 |
ggaatgggattgggaatgggtgagtgaatcattgaatcaagtaagtatagcctatgactctccctctaacacattgagtgttgttgtcatacatgccaat |
336 |
Q |
| |
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| ||||| ||| | ||||| |||||||| | ||||||| ||||| ||||||||| |||| |||||||||||||||||||||| |||||||| |
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| T |
8495998 |
------gaattggcaatttgcgagtggatcattgactaaagtaagcatagcttatgactcttcctcaaacacattgagtgttgttgtcacttatgccaat |
8495905 |
T |
|
| Q |
337 |
ggcaaaattgttaccattgctgacatagttgatttgaaaac |
377 |
Q |
| |
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|| ||| || ||||||||| | ||||||||||||||||| |
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| T |
8495904 |
ggaaaattttccaccattgctcaaatagttgatttgaaaac |
8495864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 275 - 322
Target Start/End: Original strand, 21489359 - 21489406
Alignment:
| Q |
275 |
aagtaagtatagcctatgactctccctctaacacattgagtgttgttg |
322 |
Q |
| |
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||||||||||| ||||||||||||||||||||||||||||||||||| |
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|
| T |
21489359 |
aagtaagtataatctatgactctccctctaacacattgagtgttgttg |
21489406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 124 - 159
Target Start/End: Original strand, 21482869 - 21482904
Alignment:
| Q |
124 |
aatgcttacaatcaatttgttggtgtagagtttgac |
159 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||| |
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|
| T |
21482869 |
aatgctttcaatcaatttgttggtgtagagtttgac |
21482904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 124 - 159
Target Start/End: Original strand, 21493021 - 21493056
Alignment:
| Q |
124 |
aatgcttacaatcaatttgttggtgtagagtttgac |
159 |
Q |
| |
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||||||| |||||||||||||||||||||||||||| |
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|
| T |
21493021 |
aatgctttcaatcaatttgttggtgtagagtttgac |
21493056 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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