View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18447_high_8 (Length: 311)
Name: NF18447_high_8
Description: NF18447
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18447_high_8 |
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Alignment Details
Target: chr4 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 10 - 296
Target Start/End: Complemental strand, 4389778 - 4389492
Alignment:
| Q |
10 |
catcatcatgaagcgaaaacacaccaaagcttttaccaatgtcctcatgtgcatctattttgttttgtaaatccctatgaaccttacttttatttttagc |
109 |
Q |
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| T |
4389778 |
catcatcatgaagcgaaaacacaccaaagcttttaccaatgtcctcatgtgcatctattttgttttgtaaatccctatgaaccttacttttatttttagc |
4389679 |
T |
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| Q |
110 |
cggcgccttttttctatttcccgtttgcaaatttattgccaatactactctaaaatgttttacagtggactgcatcaagtagacaagtctaacccaagaa |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4389678 |
cggcgccttttttctatttcccgtttgcaaatttattgccaatactactctaaaatgttttacagtggactgcatcaagtagacaagtctaacccaagaa |
4389579 |
T |
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| Q |
210 |
tatattttccttttattgggaattcagatatgttgggccaataaagctaaaaccaggaggcttaacgtgtctttcccttgttttaat |
296 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
4389578 |
tatattttccctttattgggaattcagatatgttgggccaataaagctaaaaccagaaggcttaacgtgtctttcccttgttttaat |
4389492 |
T |
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