View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18447_low_9 (Length: 250)
Name: NF18447_low_9
Description: NF18447
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18447_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 12 - 240
Target Start/End: Original strand, 12697871 - 12698099
Alignment:
| Q |
12 |
atgaattcaaggagtgtatatataatggatcaatcaaatgatacttaactaaatacatattattcatcccttctcaataatagcattaaagttcaattat |
111 |
Q |
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| T |
12697871 |
atgaattcaaggagtgtatatataatggatcaatcaaatgatacttaactaaatatatattattcatcccttctcaataatagcattaaagttcaattat |
12697970 |
T |
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| Q |
112 |
acatccatgttaatagaagacactgctttgaaagttacaagtcttgaagagaacattttcaatgggtagtttaactgttggaaaaggacattcaattccc |
211 |
Q |
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| T |
12697971 |
acatccatgttaatagaagacactactttgaaagttacaagtcttgaacagaacattttcaatgggtagtttaactgttggaaaaggacattcaattccc |
12698070 |
T |
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| Q |
212 |
ttcgctagcagcaattcacatggtttagg |
240 |
Q |
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| T |
12698071 |
ttcgctagcagcaattcacatggtttagg |
12698099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 93; Significance: 2e-45; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 69 - 240
Target Start/End: Original strand, 45077755 - 45077927
Alignment:
| Q |
69 |
tattattcatcccttctcaataatagcattaaagttcaa-ttatacatccatgttaatagaagacactgctttgaaagttacaagtcttgaagagaacat |
167 |
Q |
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| T |
45077755 |
tattattcattccttttcaattatagcattaaaattaaaattttacatccatgttatcagaagacactactttggaagttacaagtcttgaattgaacat |
45077854 |
T |
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| Q |
168 |
tttcaatgggtagtttaactgttggaaaaggacattcaattcccttcgctagcagcaattcacatggtttagg |
240 |
Q |
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| T |
45077855 |
tttcgatggctagtttatctgttggaaaaggacattcaatttccttctcttgcagcaattcacatggtttagg |
45077927 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 90 - 240
Target Start/End: Original strand, 45082072 - 45082223
Alignment:
| Q |
90 |
aatagcattaaagttcaattat-acatccatgttaatagaagacactgctttgaaagttacaagtcttgaagagaacattttcaatgggtagtttaactg |
188 |
Q |
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|||||||||||| ||||||| | ||||||| ||| |||||||||| ||||| ||||| ||||||||||| ||||||||||||||||||||||| || |
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| T |
45082072 |
aatagcattaaatttcaatttttacatccacattatcagaagacactactttggaagttgcaagtcttgaattgaacattttcaatgggtagtttatctc |
45082171 |
T |
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| Q |
189 |
ttggaaaaggacattcaattcccttcgctagcagcaattcacatggtttagg |
240 |
Q |
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| T |
45082172 |
ttggaaaaggacattcaatttccttctctttcagcagttcacatggtttagg |
45082223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 137 - 240
Target Start/End: Original strand, 45067034 - 45067137
Alignment:
| Q |
137 |
ctttgaaagttacaagtcttgaagagaacattttcaatgggtagtttaactgttggaaaaggacattcaattcccttcgctagcagcaattcacatggtt |
236 |
Q |
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| T |
45067034 |
ctttgaaagttacaagtcttgaactgaacattttcaatgggtagtttatctgttggaaaaggacattcgattttcttctctggcagcatatcacatggtt |
45067133 |
T |
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| Q |
237 |
tagg |
240 |
Q |
| |
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|||| |
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| T |
45067134 |
tagg |
45067137 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 130 - 206
Target Start/End: Original strand, 45074584 - 45074660
Alignment:
| Q |
130 |
gacactgctttgaaagttacaagtcttgaagagaacattttcaatgggtagtttaactgttggaaaaggacattcaa |
206 |
Q |
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| T |
45074584 |
gacactacttttgaagttacaagtcttgaactgaacattttcaatggtaagtttatcagttggaaaaggacattcaa |
45074660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 126 - 240
Target Start/End: Original strand, 34504349 - 34504463
Alignment:
| Q |
126 |
agaagacactgctttgaaagttacaagtcttgaagagaacattttcaatgggtagtttaactgttggaaaaggacattcaattcccttcgctagcagcaa |
225 |
Q |
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|||| ||||| |||| || ||||||||||||||| |||||| |||||| | | |||| |||||||||| |||||||||||| |||| || ||||| |
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| T |
34504349 |
agaacacactacttttaatgttacaagtcttgaactgaacatcttcaatagccaatttatctgttggaaagggacattcaattttcttctctgacagcag |
34504448 |
T |
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| Q |
226 |
ttcacatggtttagg |
240 |
Q |
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|||||||||||||| |
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| T |
34504449 |
atcacatggtttagg |
34504463 |
T |
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