View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18448_high_2 (Length: 359)

Name: NF18448_high_2

Description: NF18448

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF18448_high_2

[»] chr5 (2 HSPs)

Target: chr5 (Bit Score: 157; Significance: 2e-83; HSPs: 2)

Name: chr5

Description:

Target: chr5; HSP #1

Raw Score: 157; E-Value: 2e-83

Query Start/End: Original strand, 45 - 217

Target Start/End: Original strand, 28190911 - 28191082

Alignment:

Q	45	attgattgcacactcatcttcatcttttaactaattgactcctaaagagatatcttgtaactaattgacaaataataaccaacatttattcatgtgtgta	144	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|
T	28190911	attgattgcacactcatcttcatcttttaactaattgactcctaaagagatatcttgtaactaattgacaaataataaccaacatttattcacgtgtgta	28191010	T

Q	145	ggatttagaattgaaatagatttgttcacgtaagaactataaaccttccttctttaacaaatatctaactttt	217	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	28191011	ggatttagaattgaaatagatttgttcacgtaagaactataacccttccttcttt-acaaatatctaactttt	28191082	T

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Target: chr5; HSP #2

Raw Score: 41; E-Value: 0.00000000000003

Query Start/End: Original strand, 305 - 349

Target Start/End: Original strand, 28191174 - 28191218

Alignment:

Q	305	cttggtatagactttgtcaaaaaatactcaaatgcagacattcat	349	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	28191174	cttggtatagactttgtcaaaaagtactcaaatgcagacattcat	28191218	T

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