View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18448_high_5 (Length: 282)
Name: NF18448_high_5
Description: NF18448
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18448_high_5 |
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Alignment Details
Target: chr8 (Bit Score: 148; Significance: 4e-78; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 1 - 156
Target Start/End: Original strand, 30399979 - 30400134
Alignment:
| Q |
1 |
atcctctcattttctttcacccacttcaaccataacacttcatttcacctcaatcttcaaaacaatgcaacacattgttacataacaatgcagtggtagt |
100 |
Q |
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| T |
30399979 |
atcctctcattttctttcacccatttcaaccataacacttcatttcacctcaatcttcaaaacaatgcaacacattgttacataacaatgcagtggtagt |
30400078 |
T |
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| Q |
101 |
ttagttttacttcattatagatctcacccatcttccagaatctaaaaaagacagca |
156 |
Q |
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| T |
30400079 |
ttagttttacttcattatagatctcacccatcttccggaatctaaaaaagacagca |
30400134 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 210 - 268
Target Start/End: Original strand, 30400188 - 30400246
Alignment:
| Q |
210 |
gggtcatgggttccaatagtagtaaagccactaggaagagtagttcaaagggactgaaa |
268 |
Q |
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| T |
30400188 |
gggtcatgggttccaatagtagcaaagccactaggaagagtagttcaaagggactgaaa |
30400246 |
T |
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