View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18448_low_5 (Length: 344)
Name: NF18448_low_5
Description: NF18448
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18448_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 7 - 325
Target Start/End: Complemental strand, 12268109 - 12267791
Alignment:
| Q |
7 |
ggacatcatcatcaatttccaagtaactaaatctaaccttcatcaaattcagagtcaaactaatgatagtgtctacaacaataatcttcttgttgaagag |
106 |
Q |
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| T |
12268109 |
ggacattaacatcaatttccaagtaactgaatacaaccttcatcaaattcagagtcaaactaatgatagtgtctacaacaataatcttcttgttgaagag |
12268010 |
T |
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| Q |
107 |
aaagttgtggatagaatcaaatccaaattgacaactttgaaggcctctttaatttctatagtgggaagggttcaagttattagattttaattcatagcat |
206 |
Q |
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| T |
12268009 |
aaagttgtggatagaatcaaatccaaattgacaactttgaaggcatctttaatttctatagtgggaagggttcaagttattagattttaattcatagtat |
12267910 |
T |
|
| Q |
207 |
gagtatctatagctttgtcatttattcattgtgtgatctgatggcattgaactggaaggaggaacaaatgatttccaaacattcttagccctaggctgct |
306 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12267909 |
gagtatctatagctttgtcatttattcattgcgtgatctgatggcattgaactggaaggaggaacaaatgatttccaaacattcttagccctaggctgct |
12267810 |
T |
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| Q |
307 |
tattcaatggaggattttg |
325 |
Q |
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||| ||||||||||||||| |
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| T |
12267809 |
tatacaatggaggattttg |
12267791 |
T |
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