View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18448_low_7 (Length: 323)
Name: NF18448_low_7
Description: NF18448
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18448_low_7 |
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| [»] scaffold0016 (3 HSPs) |
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| [»] scaffold0103 (1 HSPs) |
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Alignment Details
Target: scaffold0016 (Bit Score: 164; Significance: 1e-87; HSPs: 3)
Name: scaffold0016
Description:
Target: scaffold0016; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 1 - 168
Target Start/End: Complemental strand, 48266 - 48099
Alignment:
| Q |
1 |
caatgacaatgataacgttgtaactaaattgtcaataggaaatgtagaaacaaattaatttagtaagttatatttctaatcaagttaaactttctttcca |
100 |
Q |
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| T |
48266 |
caatgacaatgataacgttgtaactaaattgtcaataggaaatgtagaaacaaattaatttagtaagttatatttctaatcaagttaaactttctttcca |
48167 |
T |
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| Q |
101 |
aatttctgttgcttgttaatccgttgacaaacataatattgagatgaaatcaactacatggaatcctt |
168 |
Q |
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| T |
48166 |
aatttctgttgcttgttaatccgttgacaaacatagtattgagatgaaatcaactacatggaatcctt |
48099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016; HSP #2
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 174 - 308
Target Start/End: Complemental strand, 44710 - 44576
Alignment:
| Q |
174 |
tttagcgtcattgtcttgatcttgaacattaaaggctatgattaattatatttttagttgcagtgtttctatttttaagtgaaaaattatgttaagatat |
273 |
Q |
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| T |
44710 |
tttagcgtcattgtcttgatcttgaacattaaaggctatgattaattatatttttagttgcagtgtttctatttttaagtgaaaaattatgttaagatat |
44611 |
T |
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| Q |
274 |
tcatagatttgaactatattttcaggagcatatga |
308 |
Q |
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|||| |||||||||||||||||||||||||||||| |
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| T |
44610 |
tcatggatttgaactatattttcaggagcatatga |
44576 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016; HSP #3
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 15 - 157
Target Start/End: Complemental strand, 78943 - 78810
Alignment:
| Q |
15 |
acgttgtaactaaattgtcaataggaaatgtagaaacaaattaatttagtaagttatatttctaatcaagttaaactttctttccaaatttctgttgctt |
114 |
Q |
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| T |
78943 |
acgttttaactaatttgtcaataggaaatgtagaaacaaattaatctagtaa-ttagatttctaatcaagttaaatattctttccaaatttct------- |
78852 |
T |
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| Q |
115 |
gttaatccgttgacaaacataatattgagatgaaatcaactac |
157 |
Q |
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| T |
78851 |
-ataatctgttgacaagcttaatattgggatgaaatcaactac |
78810 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 127; Significance: 1e-65; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 174 - 308
Target Start/End: Complemental strand, 27259888 - 27259754
Alignment:
| Q |
174 |
tttagcgtcattgtcttgatcttgaacattaaaggctatgattaattatatttttagttgcagtgtttctatttttaagtgaaaaattatgttaagatat |
273 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
27259888 |
tttagcgtcattgtcttgatcttgaacattaaaggctatgattaattatatttttagttgcagtgtttctatttttaagtgaaaaattatattaagatat |
27259789 |
T |
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| Q |
274 |
tcatagatttgaactatattttcaggagcatatga |
308 |
Q |
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|||| |||||||||||||||||||||||||||||| |
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| T |
27259788 |
tcatggatttgaactatattttcaggagcatatga |
27259754 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 94; Significance: 7e-46; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 195 - 308
Target Start/End: Complemental strand, 38315296 - 38315183
Alignment:
| Q |
195 |
ttgaacattaaaggctatgattaattatatttttagttgcagtgtttctatttttaagtgaaaaattatgttaagatattcatagatttgaactatattt |
294 |
Q |
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||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||| |
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| T |
38315296 |
ttgaacattaaaggctaggattaattatgattttagttgcagtgtttctatttttaagtgaaaaattatattaagatattcatggatttgaactatattt |
38315197 |
T |
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| Q |
295 |
tcaggagcatatga |
308 |
Q |
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|||||||||||||| |
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| T |
38315196 |
tcaggagcatatga |
38315183 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0103 (Bit Score: 64; Significance: 6e-28; HSPs: 1)
Name: scaffold0103
Description:
Target: scaffold0103; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 174 - 245
Target Start/End: Original strand, 8433 - 8504
Alignment:
| Q |
174 |
tttagcgtcattgtcttgatcttgaacattaaaggctatgattaattatatttttagttgcagtgtttctat |
245 |
Q |
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||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
8433 |
tttagcgtcattgtcttaatcttgaacattaaaggctaggattaattatatttttagttgcagtgtttctat |
8504 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 64; Significance: 6e-28; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 174 - 245
Target Start/End: Complemental strand, 2631579 - 2631508
Alignment:
| Q |
174 |
tttagcgtcattgtcttgatcttgaacattaaaggctatgattaattatatttttagttgcagtgtttctat |
245 |
Q |
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||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
2631579 |
tttagcgtcattgtcttaatcttgaacattaaaggctaggattaattatatttttagttgcagtgtttctat |
2631508 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 62 - 164
Target Start/End: Original strand, 33716132 - 33716234
Alignment:
| Q |
62 |
agtaagttatatttctaatcaagttaaactttctttccaaatttctgttgcttgttaatccgttgacaaacataatattgagatgaaatcaactacatgg |
161 |
Q |
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||||||| | |||| |||| |||||||| |||| || |||||||||||| |||| |||| |||| |||||||||||||| |||||||| |||| || || |
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| T |
33716132 |
agtaagtaagatttttaatgaagttaaattttcctttcaaatttctgtttcttggtaatacgttaacaaacataatatttggatgaaattaactgcacgg |
33716231 |
T |
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| Q |
162 |
aat |
164 |
Q |
| |
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||| |
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|
| T |
33716232 |
aat |
33716234 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 65 - 140
Target Start/End: Original strand, 21275012 - 21275086
Alignment:
| Q |
65 |
aagttatatttctaatcaagttaaactttctttccaaatttctgttgcttgttaatccgttgacaaacataatatt |
140 |
Q |
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|||||||||||||||| |||||||| | |||| | | |||||| |||||||||||||||| |||||||| ||||| |
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| T |
21275012 |
aagttatatttctaatgaagttaaattgtctt-cgacatttctattgcttgttaatccgtaaacaaacatgatatt |
21275086 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 66
Target Start/End: Original strand, 21178045 - 21178082
Alignment:
| Q |
29 |
ttgtcaataggaaatgtagaaacaaattaatttagtaa |
66 |
Q |
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|||| |||||||||||||||||||||| |||||||||| |
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| T |
21178045 |
ttgttaataggaaatgtagaaacaaatgaatttagtaa |
21178082 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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