View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18448_low_9 (Length: 233)
Name: NF18448_low_9
Description: NF18448
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18448_low_9 |
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| [»] scaffold0531 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 14 - 215
Target Start/End: Complemental strand, 41382354 - 41382153
Alignment:
| Q |
14 |
attatacttatcctttcatggatcatcactctctacacctcgtggcaaatggttgagatgcatgagatggttccgggaaaacgtcttgatacatataatg |
113 |
Q |
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| T |
41382354 |
attatacttatcctttcatggatcatcactctctacaccctgtggcaaatggttgagatgcatgagatggttccgggaaaacgtcttgatacatataatg |
41382255 |
T |
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| Q |
114 |
aattgggccaacgtgcgtttggtgaaaagttagggttgtggattgtgatgcctcaacaacttgtggtacaagttggggtggacattgtctacatggtcac |
213 |
Q |
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| T |
41382254 |
aattgggccaacatgcgtttggtgaaaagttagggttgtggattgtgatgcctcaacaacttgtggtacaagttggggtggacattgtctacatggtcac |
41382155 |
T |
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| Q |
214 |
cg |
215 |
Q |
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|| |
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| T |
41382154 |
cg |
41382153 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 29 - 96
Target Start/End: Original strand, 43853134 - 43853201
Alignment:
| Q |
29 |
tcatggatcatcactctctacacctcgtggcaaatggttgagatgcatgagatggttccgggaaaacg |
96 |
Q |
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| T |
43853134 |
tcatggataatcaccctctacactctatggcaaatggttgaaatgcatgaaatggttccaggaaaacg |
43853201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 148; Significance: 3e-78; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 16 - 215
Target Start/End: Original strand, 8041735 - 8041934
Alignment:
| Q |
16 |
tatacttatcctttcatggatcatcactctctacacctcgtggcaaatggttgagatgcatgagatggttccgggaaaacgtcttgatacatataatgaa |
115 |
Q |
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| T |
8041735 |
tatacttgtcctttcatggatcatcacactgtacaccttgtggcaaatggttgagatgcatgagatggttccaggaaaacgtcttgatacatataatgaa |
8041834 |
T |
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| Q |
116 |
ttgggccaacgtgcgtttggtgaaaagttagggttgtggattgtgatgcctcaacaacttgtggtacaagttggggtggacattgtctacatggtcaccg |
215 |
Q |
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| T |
8041835 |
ttagggcaacatgcttttggtgaaaagttagggttgtggattgtgatgcctcaacaacttgtggtacaggtcgggtcggacattgtctacatggtcaccg |
8041934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 16 - 215
Target Start/End: Complemental strand, 7971953 - 7971754
Alignment:
| Q |
16 |
tatacttatcctttcatggatcatcactctctacacctcgtggcaaatggttgagatgcatgagatggttccgggaaaacgtcttgatacatataatgaa |
115 |
Q |
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| T |
7971953 |
tatacttgttctttcatggatcatcacactgtacaccttgtggcaaatggttgagatgcatgagatggttccaggaaaacgtcttgatacatataatgaa |
7971854 |
T |
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| Q |
116 |
ttgggccaacgtgcgtttggtgaaaagttagggttgtggattgtgatgcctcaacaacttgtggtacaagttggggtggacattgtctacatggtcaccg |
215 |
Q |
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| T |
7971853 |
ttagggcaacatgcttttggtgaaaagttagggttgtggattgtgatgcctcaacaacttgtggtacaggtcgggtcggacattgtctacatggtcaccg |
7971754 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 16 - 215
Target Start/End: Original strand, 8031856 - 8032055
Alignment:
| Q |
16 |
tatacttatcctttcatggatcatcactctctacacctcgtggcaaatggttgagatgcatgagatggttccgggaaaacgtcttgatacatataatgaa |
115 |
Q |
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| T |
8031856 |
tatacttctcttatcatggaccatcactctgtatacattgtggcaaatggttgagatgcatgaaatgattccgggaaaacgttttgatagataccatgaa |
8031955 |
T |
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| Q |
116 |
ttgggccaacgtgcgtttggtgaaaagttagggttgtggattgtgatgcctcaacaacttgtggtacaagttggggtggacattgtctacatggtcaccg |
215 |
Q |
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| T |
8031956 |
ttaggtcaacatgcgtttggcgaaaagttaggcctttatattgtggttcctcaacaacttatagtagaagttgggggcgacattgtctacatggtcaccg |
8032055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 26 - 213
Target Start/End: Complemental strand, 7979511 - 7979324
Alignment:
| Q |
26 |
ctttcatggatcatcactctctacacctcgtggcaaatggttgagatgcatgagatggttccgggaaaacgtcttgatacatataatgaattgggccaac |
125 |
Q |
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| T |
7979511 |
ctttcatggatcatcacattctacacactttggcaaatggttgagatgcatgaaatggttccgggaaaacgctttgatagataccatgaattaggtcaac |
7979412 |
T |
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| Q |
126 |
gtgcgtttggtgaaaagttagggttgtggattgtgatgcctcaacaacttgtggtacaagttggggtggacattgtctacatggtcac |
213 |
Q |
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||| ||||| |||| ||||| | | |||||| |||||||||||||||||||| || |||| || ||||||| || |||||||| |
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| T |
7979411 |
atgcttttgggaaaaaattaggtctttatattgtggtgcctcaacaacttgtggtagaaattggtgttaacattgtttatatggtcac |
7979324 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0531 (Bit Score: 88; Significance: 2e-42; HSPs: 1)
Name: scaffold0531
Description:
Target: scaffold0531; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 16 - 215
Target Start/End: Complemental strand, 3476 - 3277
Alignment:
| Q |
16 |
tatacttatcctttcatggatcatcactctctacacctcgtggcaaatggttgagatgcatgagatggttccgggaaaacgtcttgatacatataatgaa |
115 |
Q |
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|||||||||| | ||||||||||||||||| || || | |||||||||||||||||||||||| |||||||| ||||||||| |||||| || ||||| |
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| T |
3476 |
tatacttatcttatcatggatcatcactctgtatacattgtggcaaatggttgagatgcatgaaatggttcctggaaaacgttttgataggtaccatgaa |
3377 |
T |
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| Q |
116 |
ttgggccaacgtgcgtttggtgaaaagttagggttgtggattgtgatgcctcaacaacttgtggtacaagttggggtggacattgtctacatggtcaccg |
215 |
Q |
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| T |
3376 |
ctgggacaacacgcgtttggcgaaaagttaggcctttatattgtggtgcctcaacaacttgtagtagaagttggggtgaacattgtttacatggtcaccg |
3277 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 56 - 215
Target Start/End: Complemental strand, 14198878 - 14198719
Alignment:
| Q |
56 |
tggcaaatggttgagatgcatgagatggttccgggaaaacgtcttgatacatataatgaattgggccaacgtgcgtttggtgaaaagttagggttgtgga |
155 |
Q |
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||||||||||||||||||||||| ||||| || || |||||| | |||| |||| ||||| |||| ||| ||| |||||||||||||| || ||| | |
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| T |
14198878 |
tggcaaatggttgagatgcatgaaatggtacccgggaaacgtttcgatagatatcatgaactgggtcaatatgcttttggtgaaaagttgggtctgtata |
14198779 |
T |
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| Q |
156 |
ttgtgatgcctcaacaacttgtggtacaagttggggtggacattgtctacatggtcaccg |
215 |
Q |
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|||| |||| ||||||||| | || |||| || || |||||||||||||||| |||| |
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| T |
14198778 |
ttgttgtgccacaacaacttattgttgaagtcggcgttaacattgtctacatggtaaccg |
14198719 |
T |
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