View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18449_high_1 (Length: 657)

Name: NF18449_high_1
Description: NF18449
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18449_high_1
NF18449_high_1
[»] chr8 (6 HSPs)
chr8 (22-339)||(16993666-16993983)
chr8 (411-525)||(23003963-23004079)
chr8 (417-525)||(1089844-1089953)
chr8 (412-522)||(18952529-18952641)
chr8 (469-525)||(38567740-38567795)
chr8 (438-522)||(18964829-18964916)
[»] scaffold0004 (1 HSPs)
scaffold0004 (411-525)||(35693-35809)
[»] chr5 (6 HSPs)
chr5 (411-525)||(40941507-40941623)
chr5 (411-525)||(34113884-34114000)
chr5 (411-525)||(34091750-34091869)
chr5 (418-522)||(31204988-31205091)
chr5 (469-525)||(37369319-37369374)
chr5 (469-525)||(41992709-41992764)
[»] chr3 (7 HSPs)
chr3 (411-522)||(9689037-9689150)
chr3 (411-525)||(37494512-37494628)
chr3 (411-525)||(26569754-26569870)
chr3 (417-525)||(11992930-11993040)
chr3 (469-525)||(39759757-39759812)
chr3 (469-525)||(43823145-43823200)
chr3 (469-525)||(53286069-53286124)
[»] chr2 (9 HSPs)
chr2 (411-525)||(29395501-29395617)
chr2 (411-525)||(18025742-18025858)
chr2 (417-522)||(3216607-3216714)
chr2 (417-525)||(6892815-6892925)
chr2 (411-525)||(25342158-25342271)
chr2 (453-525)||(3221528-3221602)
chr2 (411-466)||(25345495-25345550)
chr2 (469-525)||(33458045-33458100)
chr2 (469-523)||(34478619-34478672)
[»] chr6 (5 HSPs)
chr6 (411-525)||(8366055-8366171)
chr6 (411-525)||(20771812-20771928)
chr6 (521-555)||(20771996-20772030)
chr6 (469-525)||(3288171-3288226)
chr6 (469-525)||(11843630-11843685)
[»] chr7 (8 HSPs)
chr7 (411-525)||(31379977-31380095)
chr7 (411-525)||(46841858-46841974)
chr7 (469-525)||(11591847-11591902)
chr7 (469-525)||(37068427-37068482)
chr7 (469-525)||(43614163-43614218)
chr7 (469-525)||(46066867-46066922)
chr7 (469-525)||(33516113-33516168)
chr7 (469-525)||(48827207-48827262)
[»] chr4 (13 HSPs)
chr4 (411-525)||(46203735-46203851)
chr4 (411-525)||(56290460-56290576)
chr4 (469-525)||(11945190-11945245)
chr4 (469-525)||(41055148-41055203)
chr4 (469-525)||(55682410-55682465)
chr4 (478-525)||(11945100-11945146)
chr4 (472-525)||(48236487-48236539)
chr4 (469-525)||(374621-374676)
chr4 (469-525)||(2469355-2469410)
chr4 (469-521)||(7199633-7199684)
chr4 (469-525)||(37517129-37517184)
chr4 (469-525)||(37521345-37521400)
chr4 (469-525)||(44420664-44420719)
[»] scaffold0311 (2 HSPs)
scaffold0311 (412-525)||(1334-1448)
scaffold0311 (512-554)||(1511-1553)
[»] chr1 (4 HSPs)
chr1 (469-525)||(8114513-8114568)
chr1 (469-525)||(20993655-20993710)
chr1 (469-525)||(52004507-52004562)
chr1 (469-525)||(52539694-52539749)


Alignment Details
Target: chr8 (Bit Score: 186; Significance: 1e-100; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 22 - 339
Target Start/End: Original strand, 16993666 - 16993983
Alignment:
Q  22 gatgagaacgaacaaagattcgtttaaaactttgaagtaatcattaaacgtcgatcaaagtgaagatactacaagcaaaaagatattgttttgttattcc 121  Q
    ||||||||||||||| ||||| |||||||  ||||||||||||||||| |||||||||||||| |||||| |||||||| |||||||||||| |||||||    
T  16993666 gatgagaacgaacaaggattcatttaaaagattgaagtaatcattaaaagtcgatcaaagtgacgatacttcaagcaaatagatattgttttcttattcc 16993765  T
Q  122 atatagcatacaaaagtaagtatcttttacctgtaaaatcccattctttctgcaaggtcagctatttgttcatagtctctcctatctcttttgtctctag 221  Q
    |||| |||||| ||| |||||||||| |||||||||| |||||||||||  ||||||| |||||||||||||||||||||||||||||||||||||||||    
T  16993766 atatggcatacgaaaataagtatcttctacctgtaaagtcccattcttttggcaaggttagctatttgttcatagtctctcctatctcttttgtctctag 16993865  T
Q  222 atacaatctcctgatccttttcgttctgtaacaacatactaagtttccagttccactcattcatatcggtctccgtagacgatgcctacaataacgatta 321  Q
    ||||||| |||||||||||||| ||| |||||| |||||| |||||||| |||||||||| ||  | || | | ||||||||||||||| ||||| ||||    
T  16993866 atacaatttcctgatccttttcattccgtaacagcatactgagtttccatttccactcatccacgttggccacggtagacgatgcctacgataaccatta 16993965  T
Q  322 cattttcttagaactact 339  Q
    |||| |||||||||||||    
T  16993966 cattatcttagaactact 16993983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 411 - 525
Target Start/End: Original strand, 23003963 - 23004079
Alignment:
Q  411 caatagcttgtactagttgtatgtaattggtattagcgatttttgattttgctat--ctcttatttcatattatgaatacttcgtgatatttagagtaat 508  Q
    ||||| |||||||||||||||| |||||||||||||| ||||| |||||||||||  || ||||||||||||| ||||||||| ||| |||| || ||||    
T  23003963 caataacttgtactagttgtatataattggtattagccattttcgattttgctatcccttttatttcatattacgaatacttcatgaaattttgactaat 23004062  T
Q  509 gtttaaggtattttagt 525  Q
    |||||||||||||||||    
T  23004063 gtttaaggtattttagt 23004079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 417 - 525
Target Start/End: Original strand, 1089844 - 1089953
Alignment:
Q  417 cttgtactagttgtatgtaattggtattagcgatttttgattttgctat-ctcttatttcatattatgaatacttcgtgatatttagagtaatgtttaag 515  Q
    |||||||||||||||| ||||||||||| |||||||||  ||||||||| ||  |||||||| |||||||||||||  || |||| |||||| |||||||    
T  1089844 cttgtactagttgtatataattggtatttgcgattttttcttttgctatccttctatttcatgttatgaatacttcaagaaattttgagtaaagtttaag 1089943  T
Q  516 gtattttagt 525  Q
    ||||||||||    
T  1089944 gtattttagt 1089953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 412 - 522
Target Start/End: Original strand, 18952529 - 18952641
Alignment:
Q  412 aatagcttgtactagttgtatgtaattggtattagcgatttttgattttgctatc--tcttatttcatattatgaatacttcgtgatatttagagtaatg 509  Q
    |||| |||||||||||||| | ||| |||||||||| ||||| ||||||||||||  | ||||||||||||||||||  ||  ||| |||| ||||||||    
T  18952529 aataacttgtactagttgtgtataactggtattagcaattttcgattttgctatcttttttatttcatattatgaatgttttatgaaatttggagtaatg 18952628  T
Q  510 tttaaggtatttt 522  Q
    ||| |||||||||    
T  18952629 ttttaggtatttt 18952641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 469 - 525
Target Start/End: Original strand, 38567740 - 38567795
Alignment:
Q  469 ttatttcatattatgaatacttcgtgatatttagagtaatgtttaaggtattttagt 525  Q
    |||||||| |||| ||||||||| ||| |||| ||||||||||||||||||||||||    
T  38567740 ttatttcaaattaggaatacttcatga-attttgagtaatgtttaaggtattttagt 38567795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 438 - 522
Target Start/End: Complemental strand, 18964916 - 18964829
Alignment:
Q  438 tggtattagcgatttttgattttgctatctctt---atttcatattatgaatacttcgtgatatttagagtaatgtttaaggtatttt 522  Q
    ||||||||||||||||  ||||||||| || ||   |||||||||||||| || ||  ||| |||| |||||||||| ||||||||||    
T  18964916 tggtattagcgattttctattttgctaactttttttatttcatattatgattattttatgaaatttggagtaatgttgaaggtatttt 18964829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 78; Significance: 5e-36; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 411 - 525
Target Start/End: Complemental strand, 35809 - 35693
Alignment:
Q  411 caatagcttgtactagttgtatgtaattggtattagcgatttttgattttgctatctctt--atttcatattatgaatacttcgtgatatttagagtaat 508  Q
    ||||| |||||||||||||||| |||||||||||||||||||| |||||||||||| |||  ||||||||||||||||||||| ||| |||| |||||||    
T  35809 caataacttgtactagttgtatataattggtattagcgattttcgattttgctatcccttttatttcatattatgaatacttcatgaaattttgagtaat 35710  T
Q  509 gtttaaggtattttagt 525  Q
    |||||||||||||||||    
T  35709 gtttaaggtattttagt 35693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 78; Significance: 5e-36; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 411 - 525
Target Start/End: Complemental strand, 40941623 - 40941507
Alignment:
Q  411 caatagcttgtactagttgtatgtaattggtattagcgatttttgattttgctat--ctcttatttcatattatgaatacttcgtgatatttagagtaat 508  Q
    ||||| |||||||||||||||| ||||||||||||||||||||||||||||||||  || ||||||||||||||||||||||  ||| |||| |||||||    
T  40941623 caataacttgtactagttgtatataattggtattagcgatttttgattttgctatcccttttatttcatattatgaatacttaatgaaattttgagtaat 40941524  T
Q  509 gtttaaggtattttagt 525  Q
    |||||||||||||||||    
T  40941523 gtttaaggtattttagt 40941507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 411 - 525
Target Start/End: Original strand, 34113884 - 34114000
Alignment:
Q  411 caatagcttgtactagttgtatgtaattggtattagcgatttttgattttgctatctctt--atttcatattatgaatacttcgtgatatttagagtaat 508  Q
    ||||| |||||||||||||||| |||||||||||||| ||||| |||||||||||| |||  |||||||||||||||||| || ||| |||| |||||||    
T  34113884 caataacttgtactagttgtatataattggtattagccattttcgattttgctatcccttttatttcatattatgaatacatcatgaaattttgagtaat 34113983  T
Q  509 gtttaaggtattttagt 525  Q
    |||||||||||||||||    
T  34113984 gtttaaggtattttagt 34114000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 411 - 525
Target Start/End: Complemental strand, 34091869 - 34091750
Alignment:
Q  411 caatagcttgtactagttgtatgtaat---tggtattagcgatttttgattttgctat--ctcttatttcatattatgaatacttcgtg-atatttagag 504  Q
    ||||| |||||||||||||||| ||||   |||||||||| ||||| |||||||||||  || ||||||||||||||||||||||| || | ||||| ||    
T  34091869 caataacttgtactagttgtatataataattggtattagccattttcgattttgctatcccttttatttcatattatgaatacttcatgaacattta-ag 34091771  T
Q  505 taatgtttaaggtattttagt 525  Q
    |||||||||||||||||||||    
T  34091770 taatgtttaaggtattttagt 34091750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 418 - 522
Target Start/End: Complemental strand, 31205091 - 31204988
Alignment:
Q  418 ttgtactagttgtatgtaattggtattagcgatttttgattttgctatc--tcttatttcatattatgaatacttcgtgatatttagagtaatgtttaag 515  Q
    ||||||||||||||| ||||||||||| || |||||  |||||||||||  | ||||||||   |||||||||||| ||| |||| ||||||| ||||||    
T  31205091 ttgtactagttgtatataattggtattggctattttcaattttgctatcctttttatttca---tatgaatacttcatgaaattttgagtaatatttaag 31204995  T
Q  516 gtatttt 522  Q
    |||||||    
T  31204994 gtatttt 31204988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 469 - 525
Target Start/End: Complemental strand, 37369374 - 37369319
Alignment:
Q  469 ttatttcatattatgaatacttcgtgatatttagagtaatgtttaaggtattttagt 525  Q
    |||||||| |||| ||||||||| |||  |||| |||||||||||||||||||||||    
T  37369374 ttatttcaaattaggaatacttcatgaatttta-agtaatgtttaaggtattttagt 37369319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 469 - 525
Target Start/End: Original strand, 41992709 - 41992764
Alignment:
Q  469 ttatttcatattatgaatacttcgtgatatttagagtaatgtttaaggtattttagt 525  Q
    |||||||| |||| ||||||||| ||| |||| ||||||||||||||| ||||||||    
T  41992709 ttatttcaaattaggaatacttcatga-attttgagtaatgtttaaggaattttagt 41992764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 71; Significance: 8e-32; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 411 - 522
Target Start/End: Complemental strand, 9689150 - 9689037
Alignment:
Q  411 caatagcttgtactagttgtatgtaattggtattagcgatttttgattttgctat--ctcttatttcatattatgaatacttcgtgatatttagagtaat 508  Q
    ||||| |||||||||||||||| |||||||||||||| |||||||||||||||||  || ||||||||||||||||||||||| ||| |||| |||||||    
T  9689150 caataacttgtactagttgtatataattggtattagccatttttgattttgctattccttttatttcatattatgaatacttcatgaaattttgagtaat 9689051  T
Q  509 gtttaaggtatttt 522  Q
    | ||||||||||||    
T  9689050 gattaaggtatttt 9689037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 411 - 525
Target Start/End: Complemental strand, 37494628 - 37494512
Alignment:
Q  411 caatagcttgtactagttgtatgtaattggtattagcgatttttgattttgctatctctt--atttcatattatgaatacttcgtgatatttagagtaat 508  Q
    ||||| |||||||| ||||||| |||||||||||||| ||||| |||||||||||| |||  ||||||||||||||||||||| ||| |||| |||||||    
T  37494628 caataacttgtactggttgtatataattggtattagccattttcgattttgctatcccttttatttcatattatgaatacttcatgaaattttgagtaat 37494529  T
Q  509 gtttaaggtattttagt 525  Q
    |||||||||||||||||    
T  37494528 gtttaaggtattttagt 37494512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 411 - 525
Target Start/End: Original strand, 26569754 - 26569870
Alignment:
Q  411 caatagcttgtactagttgtatgtaattggtattagcgatttttgattttgctatctctt--atttcatattatgaatacttcgtgatatttagagtaat 508  Q
    ||||| |||||||| ||||||| ||||||||||| || ||||| |||||||||||| |||  ||||||||||||||||||||| ||| |||| |||||||    
T  26569754 caataacttgtactggttgtatataattggtattggctattttcgattttgctatcccttttatttcatattatgaatacttcatgaaattttgagtaat 26569853  T
Q  509 gtttaaggtattttagt 525  Q
    |||||||||||||||||    
T  26569854 gtttaaggtattttagt 26569870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 417 - 525
Target Start/End: Complemental strand, 11993040 - 11992930
Alignment:
Q  417 cttgtactagttgtatgtaattggtattagcgatttttgattttgctatctc--ttatttcatattatgaatacttcgtgatatttagagtaatgtttaa 514  Q
    ||||||||| |||||| | |||| ||||||||||||| |||||||||||| |  |||||||||||||||||||||||  || |||| |||||||||||||    
T  11993040 cttgtactaattgtatatgattgttattagcgattttcgattttgctatcccatttatttcatattatgaatacttcaagaaattttgagtaatgtttaa 11992941  T
Q  515 ggtattttagt 525  Q
    |||||||||||    
T  11992940 ggtattttagt 11992930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 469 - 525
Target Start/End: Original strand, 39759757 - 39759812
Alignment:
Q  469 ttatttcatattatgaatacttcgtgatatttagagtaatgtttaaggtattttagt 525  Q
    |||||||| |||| ||||||||| ||| |||| ||||||||||||||||||||||||    
T  39759757 ttatttcaaattaggaatacttcatga-attttgagtaatgtttaaggtattttagt 39759812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 469 - 525
Target Start/End: Complemental strand, 43823200 - 43823145
Alignment:
Q  469 ttatttcatattatgaatacttcgtgatatttagagtaatgtttaaggtattttagt 525  Q
    |||||||| |||| ||||||||| ||| |||| ||||||||||||||||||||||||    
T  43823200 ttatttcaaattaggaatacttcatga-attttgagtaatgtttaaggtattttagt 43823145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 469 - 525
Target Start/End: Complemental strand, 53286124 - 53286069
Alignment:
Q  469 ttatttcatattatgaatacttcgtgatatttagagtaatgtttaaggtattttagt 525  Q
    |||||||| |||| ||||||||  ||| |||| ||||||||||||||||||||||||    
T  53286124 ttatttcaaattaagaatacttaatga-attttgagtaatgtttaaggtattttagt 53286069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 70; Significance: 3e-31; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 411 - 525
Target Start/End: Complemental strand, 29395617 - 29395501
Alignment:
Q  411 caatagcttgtactagttgtatgtaattggtattagcgatttttgattttgctatctctt--atttcatattatgaatacttcgtgatatttagagtaat 508  Q
    ||||| |||||||| ||||||| |||||||||||||| ||||| |||||||||||| |||  ||||||||||||||||||||| ||| |||| |||||||    
T  29395617 caataacttgtactggttgtatataattggtattagccattttcgattttgctatcccttttatttcatattatgaatacttcatgaaattttgagtaat 29395518  T
Q  509 gtttaaggtattttagt 525  Q
    |||||||||||||||||    
T  29395517 gtttaaggtattttagt 29395501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 411 - 525
Target Start/End: Complemental strand, 18025858 - 18025742
Alignment:
Q  411 caatagcttgtactagttgtatgtaattggtattagcgatttttgattttgctatctctt--atttcatattatgaatacttcgtgatatttagagtaat 508  Q
    ||||| |||||||||||||||| |||||||||||||| ||||| |||||||| ||| |||  |||||||||||| |||||||| ||| |||| |||||||    
T  18025858 caataacttgtactagttgtatataattggtattagccattttcgattttgcaatcccttttatttcatattataaatacttcatgaaattttgagtaat 18025759  T
Q  509 gtttaaggtattttagt 525  Q
    | |||||||||||||||    
T  18025758 gcttaaggtattttagt 18025742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 417 - 522
Target Start/End: Original strand, 3216607 - 3216714
Alignment:
Q  417 cttgtactagttgtatgtaattggtattagcgatttttgattttgctatctctt--atttcatattatgaatacttcgtgatatttagagtaatgtttaa 514  Q
    |||||||||||||||| |||||  ||||||||||| | |||||||||||| |||  ||||||||||||||||||||| ||| | || |||||||||||||    
T  3216607 cttgtactagttgtatataattcttattagcgattatcgattttgctatcccttttatttcatattatgaatacttcatgaaactttgagtaatgtttaa 3216706  T
Q  515 ggtatttt 522  Q
    ||||||||    
T  3216707 ggtatttt 3216714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 417 - 525
Target Start/End: Original strand, 6892815 - 6892925
Alignment:
Q  417 cttgtactagttgtatgtaattggtattagcgatttttgattttgctatctctt--atttcatattatgaatacttcgtgatatttagagtaatgtttaa 514  Q
    |||||||||||||||| ||| | |||||||| |||||  ||||||||||| |||  ||||||||| ||||||||||| ||| |||| |||||||||||||    
T  6892815 cttgtactagttgtatataactagtattagccattttcaattttgctatcccttttatttcatatgatgaatacttcatgaaattttgagtaatgtttaa 6892914  T
Q  515 ggtattttagt 525  Q
    |||||||||||    
T  6892915 ggtattttagt 6892925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 411 - 525
Target Start/End: Complemental strand, 25342271 - 25342158
Alignment:
Q  411 caatagcttgtactagttgtatgtaattggtattagcgatttttgattttgctat--ctcttatttcatattatgaatacttcgtgatatttagagtaat 508  Q
    ||||| |||||||||||||||| ||||||||||||   ||||| |||||||||||  || |||||||||||||||||||   | ||| |||| |||||||    
T  25342271 caataacttgtactagttgtatataattggtattattcattttcgattttgctatcccttttatttcatattatgaata---catgaaattttgagtaat 25342175  T
Q  509 gtttaaggtattttagt 525  Q
    |||||||||||||||||    
T  25342174 gtttaaggtattttagt 25342158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 453 - 525
Target Start/End: Complemental strand, 3221602 - 3221528
Alignment:
Q  453 ttgattttgctatctctt--atttcatattatgaatacttcgtgatatttagagtaatgtttaaggtattttagt 525  Q
    |||||||||||||| |||  ||||||||||||||||||||| ||| | || ||||||||||||||||||||||||    
T  3221602 ttgattttgctatcccttttatttcatattatgaatacttcatgaaactttgagtaatgtttaaggtattttagt 3221528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 411 - 466
Target Start/End: Original strand, 25345495 - 25345550
Alignment:
Q  411 caatagcttgtactagttgtatgtaattggtattagcgatttttgattttgctatc 466  Q
    ||||| |||||||||||||||| |||||||||||||| ||||| ||||||||||||    
T  25345495 caataacttgtactagttgtatataattggtattagccattttcgattttgctatc 25345550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 469 - 525
Target Start/End: Complemental strand, 33458100 - 33458045
Alignment:
Q  469 ttatttcatattatgaatacttcgtgatatttagagtaatgtttaaggtattttagt 525  Q
    |||||||| |||| ||||||||| ||| |||| ||||||||||||||||||||||||    
T  33458100 ttatttcaaattaggaatacttcatga-attttgagtaatgtttaaggtattttagt 33458045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 469 - 523
Target Start/End: Complemental strand, 34478672 - 34478619
Alignment:
Q  469 ttatttcatattatgaatacttcgtgatatttagagtaatgtttaaggtatttta 523  Q
    |||||||| |||| ||||||||| ||| |||| ||||||||||||||||||||||    
T  34478672 ttatttcaaattaggaatacttcatga-attttgagtaatgtttaaggtatttta 34478619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 62; Significance: 2e-26; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 411 - 525
Target Start/End: Complemental strand, 8366171 - 8366055
Alignment:
Q  411 caatagcttgtactagttgtatgtaattggtattagcgatttttgattttgctat--ctcttatttcatattatgaatacttcgtgatatttagagtaat 508  Q
    ||||| |||||||||||||||| |||||||||||||| ||||| |||||||||||  || |||||||||||||||||||| || ||| | ||  ||||||    
T  8366171 caataacttgtactagttgtatataattggtattagccattttcgattttgctatcccttttatttcatattatgaatacatcatgaaaatttaagtaat 8366072  T
Q  509 gtttaaggtattttagt 525  Q
    |||||||||||||||||    
T  8366071 gtttaaggtattttagt 8366055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 411 - 525
Target Start/End: Original strand, 20771812 - 20771928
Alignment:
Q  411 caatagcttgtactagttgtatgtaattggtattagcgatttttgattttgctat--ctcttatttcatattatgaatacttcgtgatatttagagtaat 508  Q
    ||||| |||||||| ||||||| |||||||||||||| ||||| |||||||||||  || ||||||||||||||||| ||||| ||| |||| ||||||     
T  20771812 caataacttgtactggttgtatataattggtattagccattttcgattttgctatcccttttatttcatattatgaaaacttcatgaaattttgagtaac 20771911  T
Q  509 gtttaaggtattttagt 525  Q
     ||||||||||||||||    
T  20771912 atttaaggtattttagt 20771928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 521 - 555
Target Start/End: Original strand, 20771996 - 20772030
Alignment:
Q  521 ttagtggccgcaccaccgaaatagcacccgctacg 555  Q
    ||||||||||||||||||||||||||| |||||||    
T  20771996 ttagtggccgcaccaccgaaatagcacacgctacg 20772030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 469 - 525
Target Start/End: Complemental strand, 3288226 - 3288171
Alignment:
Q  469 ttatttcatattatgaatacttcgtgatatttagagtaatgtttaaggtattttagt 525  Q
    |||||||| |||| ||||||||| ||| |||| |||||||||||||||||| |||||    
T  3288226 ttatttcaaattaggaatacttcatga-attttgagtaatgtttaaggtatcttagt 3288171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 469 - 525
Target Start/End: Original strand, 11843630 - 11843685
Alignment:
Q  469 ttatttcatattatgaatacttcgtgatatttagagtaatgtttaaggtattttagt 525  Q
    |||||||| |||| ||||||||  ||| |||| ||||||||||||||||||||||||    
T  11843630 ttatttcaaattaagaatacttaatga-attttgagtaatgtttaaggtattttagt 11843685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 61; Significance: 7e-26; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 411 - 525
Target Start/End: Original strand, 31379977 - 31380095
Alignment:
Q  411 caatagcttgtactagttgtatgtaattggtattagcgatttttgattttgctat--ctcttatttc--atattatgaatacttcgtgatatttagagta 506  Q
    ||||| |||||||||||||||| |||||||||||||| |||||||||||||||||  || |||||||  |||||||||||||||| ||| |||| |||||    
T  31379977 caataacttgtactagttgtatataattggtattagccatttttgattttgctatcccttttatttcatatattatgaatacttcatgaaattttgagta 31380076  T
Q  507 atgtttaaggtattttagt 525  Q
    ||||| || ||||||||||    
T  31380077 atgttaaatgtattttagt 31380095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 411 - 525
Target Start/End: Original strand, 46841858 - 46841974
Alignment:
Q  411 caatagcttgtactagttgtatgtaattggtattagcgatttttgattttgctatctct--tatttcatattatgaatacttcgtgatatttagagtaat 508  Q
    ||||| |||||||||||||||| || ||| ||||||| ||||  |||||||||||| ||  |||||||||||| ||||||||| ||| |||| |||||||    
T  46841858 caataacttgtactagttgtatatagttgatattagctatttccgattttgctatccctattatttcatattacgaatacttcatgaaattttgagtaat 46841957  T
Q  509 gtttaaggtattttagt 525  Q
    |||||||||||||||||    
T  46841958 gtttaaggtattttagt 46841974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 469 - 525
Target Start/End: Original strand, 11591847 - 11591902
Alignment:
Q  469 ttatttcatattatgaatacttcgtgatatttagagtaatgtttaaggtattttagt 525  Q
    |||||||| |||| ||||||||| ||| |||| ||||||||||||||||||||||||    
T  11591847 ttatttcaaattaggaatacttcatga-attttgagtaatgtttaaggtattttagt 11591902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 469 - 525
Target Start/End: Original strand, 37068427 - 37068482
Alignment:
Q  469 ttatttcatattatgaatacttcgtgatatttagagtaatgtttaaggtattttagt 525  Q
    |||||||| |||||||||||||| |||| ||| || |||||||||||||||||||||    
T  37068427 ttatttcaaattatgaatacttcatgattttt-gattaatgtttaaggtattttagt 37068482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 469 - 525
Target Start/End: Original strand, 43614163 - 43614218
Alignment:
Q  469 ttatttcatattatgaatacttcgtgatatttagagtaatgtttaaggtattttagt 525  Q
    |||||||| |||| ||||||||| ||| |||| ||||||||||||||||||||||||    
T  43614163 ttatttcaaattaggaatacttcatga-attttgagtaatgtttaaggtattttagt 43614218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 469 - 525
Target Start/End: Complemental strand, 46066922 - 46066867
Alignment:
Q  469 ttatttcatattatgaatacttcgtgatatttagagtaatgtttaaggtattttagt 525  Q
    |||||||| |||| ||||||||| ||| |||| ||||||||||||||||||||||||    
T  46066922 ttatttcaaattaggaatacttcatga-attttgagtaatgtttaaggtattttagt 46066867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 469 - 525
Target Start/End: Complemental strand, 33516168 - 33516113
Alignment:
Q  469 ttatttcatattatgaatacttcgtgatatttagagtaatgtttaaggtattttagt 525  Q
    |||||||| |||| ||||||||| ||| |||| |||| |||||||||||||||||||    
T  33516168 ttatttcaaattaggaatacttcatga-attttgagtgatgtttaaggtattttagt 33516113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 469 - 525
Target Start/End: Original strand, 48827207 - 48827262
Alignment:
Q  469 ttatttcatattatgaatacttcgtgatatttagagtaatgtttaaggtattttagt 525  Q
    |||||||| |||| ||||||||  ||| |||| ||||||||||||||||||||||||    
T  48827207 ttatttcaaattaggaatacttaatga-attttgagtaatgtttaaggtattttagt 48827262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 54; Significance: 1e-21; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 411 - 525
Target Start/End: Original strand, 46203735 - 46203851
Alignment:
Q  411 caatagcttgtactagttgtatgtaattggtattagcgatttttgattttgctat--ctcttatttcatattatgaatacttcgtgatatttagagtaat 508  Q
    ||||| ||||||| |||||||| |||||||||||||| ||||| |||||||||||  || ||||||||||| ||||||||||| ||  |||| ||||||     
T  46203735 caataacttgtacaagttgtatataattggtattagccattttcgattttgctatcccttttatttcatatgatgaatacttcatgtaattttgagtaac 46203834  T
Q  509 gtttaaggtattttagt 525  Q
    ||||||| |||||||||    
T  46203835 gtttaagttattttagt 46203851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 411 - 525
Target Start/End: Original strand, 56290460 - 56290576
Alignment:
Q  411 caatagcttgtactagttgtatgtaattggtattagcgatttttgattttgctat--ctcttatttcatattatgaatacttcgtgatatttagagtaat 508  Q
    ||||| |||||||||||||||| |||||||||||||| ||||| |||||| ||||  || |||||||||||||| |||| ||| ||| | || |||| ||    
T  56290460 caataacttgtactagttgtatataattggtattagccattttcgatttttctatcccttttatttcatattataaatatttcttgaaactttgagtcat 56290559  T
Q  509 gtttaaggtattttagt 525  Q
    |||||||||||||||||    
T  56290560 gtttaaggtattttagt 56290576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 469 - 525
Target Start/End: Complemental strand, 11945245 - 11945190
Alignment:
Q  469 ttatttcatattatgaatacttcgtgatatttagagtaatgtttaaggtattttagt 525  Q
    |||||||  |||||||||||||| ||| |||| ||||||||||||||||||||||||    
T  11945245 ttatttcgaattatgaatacttcatga-attttgagtaatgtttaaggtattttagt 11945190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 469 - 525
Target Start/End: Complemental strand, 41055203 - 41055148
Alignment:
Q  469 ttatttcatattatgaatacttcgtgatatttagagtaatgtttaaggtattttagt 525  Q
    |||||||| |||| ||||||||| ||| |||| ||||||||||||||||||||||||    
T  41055203 ttatttcaaattaggaatacttcatga-attttgagtaatgtttaaggtattttagt 41055148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 469 - 525
Target Start/End: Original strand, 55682410 - 55682465
Alignment:
Q  469 ttatttcatattatgaatacttcgtgatatttagagtaatgtttaaggtattttagt 525  Q
    |||||||| |||| ||||||||| ||| |||| ||||||||||||||||||||||||    
T  55682410 ttatttcaaattaggaatacttcatga-attttgagtaatgtttaaggtattttagt 55682465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 478 - 525
Target Start/End: Complemental strand, 11945146 - 11945100
Alignment:
Q  478 attatgaatacttcgtgatatttagagtaatgtttaaggtattttagt 525  Q
    |||||||||||||| ||| |||| ||||||||||||||||||||||||    
T  11945146 attatgaatacttcatga-attttgagtaatgtttaaggtattttagt 11945100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 472 - 525
Target Start/End: Original strand, 48236487 - 48236539
Alignment:
Q  472 tttcatattatgaatacttcgtgatatttagagtaatgtttaaggtattttagt 525  Q
    ||||| |||| ||||||||| ||| |||| ||||||||||||||||||||||||    
T  48236487 tttcaaattaggaatacttcatga-attttgagtaatgtttaaggtattttagt 48236539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 469 - 525
Target Start/End: Complemental strand, 374676 - 374621
Alignment:
Q  469 ttatttcatattatgaatacttcgtgatatttagagtaatgtttaaggtattttagt 525  Q
    |||||||| |||| ||||||||| ||| |||| ||||||||||||||| ||||||||    
T  374676 ttatttcaaattaagaatacttcatga-attttgagtaatgtttaaggaattttagt 374621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 469 - 525
Target Start/End: Original strand, 2469355 - 2469410
Alignment:
Q  469 ttatttcatattatgaatacttcgtgatatttagagtaatgtttaaggtattttagt 525  Q
    |||||||| |||| ||||||||| ||| |||| |||||||||||||| |||||||||    
T  2469355 ttatttcaaattaggaatacttcatga-attttgagtaatgtttaagatattttagt 2469410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 469 - 521
Target Start/End: Original strand, 7199633 - 7199684
Alignment:
Q  469 ttatttcatattatgaatacttcgtgatatttagagtaatgtttaaggtattt 521  Q
    |||||||| |||| ||||||||| ||| |||| ||||||||||||||||||||    
T  7199633 ttatttcaaattaggaatacttcatga-attttgagtaatgtttaaggtattt 7199684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 469 - 525
Target Start/End: Complemental strand, 37517184 - 37517129
Alignment:
Q  469 ttatttcatattatgaatacttcgtgatatttagagtaatgtttaaggtattttagt 525  Q
    |||||| | |||| ||||||||| ||| |||| ||||||||||||||||||||||||    
T  37517184 ttattttaaattaggaatacttcatga-attttgagtaatgtttaaggtattttagt 37517129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 469 - 525
Target Start/End: Complemental strand, 37521400 - 37521345
Alignment:
Q  469 ttatttcatattatgaatacttcgtgatatttagagtaatgtttaaggtattttagt 525  Q
    |||||| | |||| ||||||||| ||| |||| ||||||||||||||||||||||||    
T  37521400 ttattttaaattaggaatacttcatga-attttgagtaatgtttaaggtattttagt 37521345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 469 - 525
Target Start/End: Complemental strand, 44420719 - 44420664
Alignment:
Q  469 ttatttcatattatgaatacttcgtgatatttagagtaatgtttaaggtattttagt 525  Q
    |||||||| |||||||||||||| | | |||| ||||||| ||||||||||||||||    
T  44420719 ttatttcaaattatgaatacttcataa-attttgagtaatatttaaggtattttagt 44420664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0311 (Bit Score: 53; Significance: 4e-21; HSPs: 2)
Name: scaffold0311
Description:

Target: scaffold0311; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 412 - 525
Target Start/End: Original strand, 1334 - 1448
Alignment:
Q  412 aatagcttgtactagttgtatgtaattggtattagcgatttttgattttgctat--ctcttatttcatattatgaatacttcgtgatatttagagtaatg 509  Q
    |||| ||||||||  |||||| |||||||||||||| ||||| |||||||||||  || ||||||||||||||||||||||| ||| |||| |||||||     
T  1334 aataacttgtactcattgtatataattggtattagccattttcgattttgctatcccttttatttcatattatgaatacttcatgaaattttgagtaat- 1432  T
Q  510 tttaaggtattttagt 525  Q
     |||||||||||||||    
T  1433 attaaggtattttagt 1448  T

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Target: scaffold0311; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 512 - 554
Target Start/End: Original strand, 1511 - 1553
Alignment:
Q  512 taaggtattttagtggccgcaccaccgaaatagcacccgctac 554  Q
    ||||||||||||||||| |||||||||||||||| ||||||||    
T  1511 taaggtattttagtggctgcaccaccgaaatagcgcccgctac 1553  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000009; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 469 - 525
Target Start/End: Original strand, 8114513 - 8114568
Alignment:
Q  469 ttatttcatattatgaatacttcgtgatatttagagtaatgtttaaggtattttagt 525  Q
    |||||| | |||||||||||||| | | |||| ||||||||||||||||||||||||    
T  8114513 ttattttaaattatgaatacttcataa-attttgagtaatgtttaaggtattttagt 8114568  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 469 - 525
Target Start/End: Complemental strand, 20993710 - 20993655
Alignment:
Q  469 ttatttcatattatgaatacttcgtgatatttagagtaatgtttaaggtattttagt 525  Q
    |||||||| || | ||||||||| ||| |||| ||||||||||||||||||||||||    
T  20993710 ttatttcaaataaggaatacttcatga-attttgagtaatgtttaaggtattttagt 20993655  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 469 - 525
Target Start/End: Complemental strand, 52004562 - 52004507
Alignment:
Q  469 ttatttcatattatgaatacttcgtgatatttagagtaatgtttaaggtattttagt 525  Q
    |||||||| |||| ||||||||| ||| || | ||||||||||||||||||||||||    
T  52004562 ttatttcaaattaggaatacttcatga-atcttgagtaatgtttaaggtattttagt 52004507  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 469 - 525
Target Start/End: Original strand, 52539694 - 52539749
Alignment:
Q  469 ttatttcatattatgaatacttcgtgatatttagagtaatgtttaaggtattttagt 525  Q
    |||||||| |||| ||||||||| ||| |||| ||||||||||||||| ||||||||    
T  52539694 ttatttcaaattaggaatacttcatga-attttgagtaatgtttaaggaattttagt 52539749  T

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