View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18449_high_3 (Length: 321)

Name: NF18449_high_3

Description: NF18449

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF18449_high_3

[»] chr3 (2 HSPs)

Target: chr3 (Bit Score: 148; Significance: 4e-78; HSPs: 2)

Name: chr3

Description:

Target: chr3; HSP #1

Raw Score: 148; E-Value: 4e-78

Query Start/End: Original strand, 12 - 201

Target Start/End: Complemental strand, 8383011 - 8382823

Alignment:

Q	12	gacatcatcaggacacatcttccatcagaattgtctgtcctaaagaggttatccgacactgtgtcagacaccaaacaccttcaatcaaatgaaggtacta	111	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	8383011	gacatcatcaggacacatcttccatcagaattgtctgtcctaaagaggttatccgacactgtgtcagacaccagacaccttcaatcaaatgaaggtacta	8382912	T

Q	112	tgtaatcaaataaacctgactaatattgcnnnnnnnnnntcatcagatacaatatcaacttatttatttcaaaaaccagtttttaccaag	201	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	8382911	tgtaatcaaataaacctgactaatattg-taaaaaaaaatcatcagatacaatatcaacttatttatttcaaaaaccagtttttaccaag	8382823	T

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Target: chr3; HSP #2

Raw Score: 31; E-Value: 0.00000003

Query Start/End: Original strand, 273 - 303

Target Start/End: Complemental strand, 8382772 - 8382742

Alignment:

Q	273	taccagggcaccagctgagagaggtagaagg	303	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	8382772	taccagggcaccagctgagagaggtagaagg	8382742	T

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