View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18449_high_5 (Length: 265)
Name: NF18449_high_5
Description: NF18449
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18449_high_5 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 158; Significance: 4e-84; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 48 - 244
Target Start/End: Original strand, 22806470 - 22806664
Alignment:
| Q |
48 |
acatgctgcaaagttacaagcaattagcacattccaggattcaaggagcatagcaatcatgaataacatcttataacaggcgcaatgaacaaggtggctg |
147 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22806470 |
acatgctgcaaagttacaagaaattagcacattccaggattcaaggagcatggcaatcatgaataacatcttataacaggcgcaatgaacaaggtggcta |
22806569 |
T |
|
| Q |
148 |
ttagactaaaaaatgcatcaagaatgatagaacctcacggaatatataagtataaagtgcactcaatcactcctgaagtgtgtgcaatctgtataaa |
244 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||| || |||||||||||||||||||| |
|
|
| T |
22806570 |
ttagactaacaaatgcatcaagaatgatagaacctcacggaatatacaagtataaagtgcactcaatccctcgtg--gtgtgtgcaatctgtataaa |
22806664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 49 - 121
Target Start/End: Complemental strand, 28813661 - 28813589
Alignment:
| Q |
49 |
catgctgcaaagttacaagcaattagcacattccaggattcaaggagcatagcaatcatgaataacatcttat |
121 |
Q |
| |
|
|||| ||||||| | |||||||||||||||||| | ||||||||||| || ||||||||||||||||||||| |
|
|
| T |
28813661 |
catgatgcaaagctgcaagcaattagcacattctaagattcaaggagtatgccaatcatgaataacatcttat |
28813589 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 57 - 121
Target Start/End: Complemental strand, 22323363 - 22323299
Alignment:
| Q |
57 |
aaagttacaagcaattagcacattccaggattcaaggagcatagcaatcatgaataacatcttat |
121 |
Q |
| |
|
|||||| |||| ||||| ||||||| ||| |||||||| ||| ||||||||||||| ||||||| |
|
|
| T |
22323363 |
aaagttgcaagaaattatcacattctaggcttcaaggaacatgacaatcatgaataaaatcttat |
22323299 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 57 - 121
Target Start/End: Complemental strand, 22338422 - 22338358
Alignment:
| Q |
57 |
aaagttacaagcaattagcacattccaggattcaaggagcatagcaatcatgaataacatcttat |
121 |
Q |
| |
|
|||||| |||| ||||| ||||||| ||| |||||||| ||| ||||||||||||| ||||||| |
|
|
| T |
22338422 |
aaagttgcaagaaattatcacattctaggcttcaaggaacatgacaatcatgaataaaatcttat |
22338358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University