View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18449_high_6 (Length: 203)

Name: NF18449_high_6
Description: NF18449
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18449_high_6
NF18449_high_6
[»] chr2 (3 HSPs)
chr2 (1-186)||(9928498-9928687)
chr2 (126-167)||(42497206-42497247)
chr2 (72-100)||(42495177-42495205)
[»] chr5 (1 HSPs)
chr5 (66-100)||(43065809-43065843)


Alignment Details
Target: chr2 (Bit Score: 173; Significance: 3e-93; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 173; E-Value: 3e-93
Query Start/End: Original strand, 1 - 186
Target Start/End: Complemental strand, 9928687 - 9928498
Alignment:
Q  1 ttgattctccattaggccatatctccacctttctaggaagccaaaatatgtgatatattcatatgtttatgttttgaattttatcaaaataagctgcata 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9928687 ttgattctccattaggccatatctccacctttctaggaagccaaaatatgtgatatattcatatgtttatgttttgaattttatcaaaataagctgcata 9928588  T
Q  101 gtgcataagaaaatgtctcttaatatttttgggttaatgttgtagacttttagtcgcttttacctct----cttttttcttggaattcat 186  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    |||||||||||||||||||    
T  9928587 gtgcataagaaaatgtctcttaatatttttgggttaatgttgtagacttttagtcgcttttacctctctttcttttttcttggaattcat 9928498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 126 - 167
Target Start/End: Complemental strand, 42497247 - 42497206
Alignment:
Q  126 tttttgggttaatgttgtagacttttagtcgcttttacctct 167  Q
    |||| |||||||||||||||||||||||||||||||||||||    
T  42497247 ttttggggttaatgttgtagacttttagtcgcttttacctct 42497206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 100
Target Start/End: Complemental strand, 42495205 - 42495177
Alignment:
Q  72 ttttgaattttatcaaaataagctgcata 100  Q
    |||||||||||||||||||||||||||||    
T  42495205 ttttgaattttatcaaaataagctgcata 42495177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 100
Target Start/End: Complemental strand, 43065843 - 43065809
Alignment:
Q  66 tttatgttttgaattttatcaaaataagctgcata 100  Q
    ||||| |||||||||||||||||||||||||||||    
T  43065843 tttatattttgaattttatcaaaataagctgcata 43065809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University