View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18449_low_2 (Length: 426)
Name: NF18449_low_2
Description: NF18449
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18449_low_2 |
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| [»] scaffold0172 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 371; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 19 - 420
Target Start/End: Original strand, 46025764 - 46026166
Alignment:
| Q |
19 |
tgtcccaccgcaacatcggctataagaactccataggcattagatttttcacccgtgaagctagccattttcatattggttgggatcaagtcttccatgt |
118 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46025764 |
tgtcccaccacaacatcggctataagaactccataggcattagatttttcacccgtgaagctagccattttcatattggttgggatcaagtcttccatgt |
46025863 |
T |
|
| Q |
119 |
tctttcccggcttctttgaagttagaaacgacataacatttacaactacaccgccattaatggagactcggctagacatttttccattgacagaagctat |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| |
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| T |
46025864 |
tctttcccggcttctttgaagttagaaacgacataacatttacaactacaccgccattaatggagactcgactagacatttttccattgacagaagttat |
46025963 |
T |
|
| Q |
219 |
gatgaactaaggcttaagatgttttaccatgtctcggacggccttttcaaataacataccttcagtttcctttctttcggctaaggcagcccatttagtg |
318 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
46025964 |
gatgaactaaggcttaagatgttttaccatgtctcggacggccttttcaaataacataccttcagtttcctttctttcggctaaggcggcccatttagtg |
46026063 |
T |
|
| Q |
319 |
tcttcaacgaacacatcaccttctag-tctcttagctgaatattgcctcctcatattccaaagggatcaagttgatggtgtctatttctaccatgatgat |
417 |
Q |
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||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
46026064 |
tcttcaacgaaaacatcaccttctagttctcttagctgaatattgcctcctcatattccaaagggatcaagttgatggtgtctatttctaccatgacgat |
46026163 |
T |
|
| Q |
418 |
gtc |
420 |
Q |
| |
|
||| |
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|
| T |
46026164 |
gtc |
46026166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 19 - 419
Target Start/End: Complemental strand, 46261894 - 46261492
Alignment:
| Q |
19 |
tgtcccaccgcaacatcggctataagaactccatagg-cattagatttttcacccgtgaagctagccattttcatattggttgggatcaagtcttccatg |
117 |
Q |
| |
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||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46261894 |
tgtcccaccacaacatcggctataagaactccatagggcattagatttttcacccgtgaagctagccattttcatattggttgggatcaagtcttccatg |
46261795 |
T |
|
| Q |
118 |
ttctttcccggcttctttgaagttagaaacgacataacatttacaactacaccgccattaatggagactcggctagacatttttccattgacagaagcta |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
46261794 |
ttctttcccggcttctttgaagttagaaacgacataacatttacaactacaccgccattaatggagactcggctagacatttttccattgacagaagtta |
46261695 |
T |
|
| Q |
218 |
tgatgaactaaggcttaagatgttttaccatgtctcggacggccttttcaaataacataccttcagtttcctttctttcggctaaggcagcccatttagt |
317 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| |
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| T |
46261694 |
tgatgaactaaggcttaagatgttttaccatgtctcggacggccttttcaaataacataccttcagtttcctttctttcagctaaggcggcccatttagt |
46261595 |
T |
|
| Q |
318 |
gtcttcaacgaacacatcaccttctag-tctcttagctgaatattgcctcctcatattccaaagggatcaagttgatggtgtctatttctaccatgatga |
416 |
Q |
| |
|
|||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
46261594 |
gtcttcaacgaaaacatcaccttctagttctcttagctgaatattgcctcctcatattccaaagggatcaagttgatggtgtctatttctaccatgacga |
46261495 |
T |
|
| Q |
417 |
tgt |
419 |
Q |
| |
|
||| |
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|
| T |
46261494 |
tgt |
46261492 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 19 - 123
Target Start/End: Complemental strand, 46305580 - 46305474
Alignment:
| Q |
19 |
tgtcccaccgcaacatcggctataagaactccataggcattagatttttcacccgtgaagctagccattttcatattggttgggatcaagtc--ttccat |
116 |
Q |
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||||||||| || ||||||||||||||||||||||||||| ||| |||||||| ||||| ||||||||||||| ||||||||||||||||| |||||| |
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| T |
46305580 |
tgtcccaccacattatcggctataagaactccataggcattggatgtttcacccatgaagatagccattttcatgttggttgggatcaagtctattccat |
46305481 |
T |
|
| Q |
117 |
gttcttt |
123 |
Q |
| |
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||||||| |
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|
| T |
46305480 |
gttcttt |
46305474 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 218 - 252
Target Start/End: Complemental strand, 46305416 - 46305382
Alignment:
| Q |
218 |
tgatgaactaaggcttaagatgttttaccatgtct |
252 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
46305416 |
tgatgaactaaggcttaagatgttttaccatgtct |
46305382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0172 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0172
Description:
Target: scaffold0172; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 68 - 134
Target Start/End: Original strand, 27183 - 27249
Alignment:
| Q |
68 |
cacccgtgaagctagccattttcatattggttgggatcaagtcttccatgttctttcccggcttctt |
134 |
Q |
| |
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||||| |||||||||||||||||||||| || |||| |||||||||||||| || ||| ||||||| |
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| T |
27183 |
cacccatgaagctagccattttcatattagtagggactaagtcttccatgtttttacccagcttctt |
27249 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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