View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18449_low_3 (Length: 407)
Name: NF18449_low_3
Description: NF18449
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18449_low_3 |
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| [»] scaffold0172 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 350; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 19 - 399
Target Start/End: Original strand, 46025764 - 46026145
Alignment:
| Q |
19 |
tgtcccaccgcaacatcggctataagaactccataggcattagatttttcacccgtgaagctagccattttcatattggttgggatcaagtcttccatgt |
118 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46025764 |
tgtcccaccacaacatcggctataagaactccataggcattagatttttcacccgtgaagctagccattttcatattggttgggatcaagtcttccatgt |
46025863 |
T |
|
| Q |
119 |
tctttcccggcttctttgaagttagaaacgacataacatttacaactacaccgccattaatggagactcggctagacatttttccattgacagaagctat |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| |
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| T |
46025864 |
tctttcccggcttctttgaagttagaaacgacataacatttacaactacaccgccattaatggagactcgactagacatttttccattgacagaagttat |
46025963 |
T |
|
| Q |
219 |
gatgaactaaggcttaagatgttttaccatgtctcggacggccttttcaaataacataccttcagtttcctttctttcggctaaggcagcccatttagtg |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
46025964 |
gatgaactaaggcttaagatgttttaccatgtctcggacggccttttcaaataacataccttcagtttcctttctttcggctaaggcggcccatttagtg |
46026063 |
T |
|
| Q |
319 |
tcttcaacgaacacatcaccttctag-tctcttagctgaatattgcctcctcatattccaaagggatcaagttgatgatgtc |
399 |
Q |
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||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
46026064 |
tcttcaacgaaaacatcaccttctagttctcttagctgaatattgcctcctcatattccaaagggatcaagttgatggtgtc |
46026145 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 19 - 399
Target Start/End: Complemental strand, 46261894 - 46261512
Alignment:
| Q |
19 |
tgtcccaccgcaacatcggctataagaactccatagg-cattagatttttcacccgtgaagctagccattttcatattggttgggatcaagtcttccatg |
117 |
Q |
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||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46261894 |
tgtcccaccacaacatcggctataagaactccatagggcattagatttttcacccgtgaagctagccattttcatattggttgggatcaagtcttccatg |
46261795 |
T |
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| Q |
118 |
ttctttcccggcttctttgaagttagaaacgacataacatttacaactacaccgccattaatggagactcggctagacatttttccattgacagaagcta |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
46261794 |
ttctttcccggcttctttgaagttagaaacgacataacatttacaactacaccgccattaatggagactcggctagacatttttccattgacagaagtta |
46261695 |
T |
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| Q |
218 |
tgatgaactaaggcttaagatgttttaccatgtctcggacggccttttcaaataacataccttcagtttcctttctttcggctaaggcagcccatttagt |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| |
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| T |
46261694 |
tgatgaactaaggcttaagatgttttaccatgtctcggacggccttttcaaataacataccttcagtttcctttctttcagctaaggcggcccatttagt |
46261595 |
T |
|
| Q |
318 |
gtcttcaacgaacacatcaccttctag-tctcttagctgaatattgcctcctcatattccaaagggatcaagttgatgatgtc |
399 |
Q |
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|||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
46261594 |
gtcttcaacgaaaacatcaccttctagttctcttagctgaatattgcctcctcatattccaaagggatcaagttgatggtgtc |
46261512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 19 - 123
Target Start/End: Complemental strand, 46305580 - 46305474
Alignment:
| Q |
19 |
tgtcccaccgcaacatcggctataagaactccataggcattagatttttcacccgtgaagctagccattttcatattggttgggatcaagtc--ttccat |
116 |
Q |
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||||||||| || ||||||||||||||||||||||||||| ||| |||||||| ||||| ||||||||||||| ||||||||||||||||| |||||| |
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| T |
46305580 |
tgtcccaccacattatcggctataagaactccataggcattggatgtttcacccatgaagatagccattttcatgttggttgggatcaagtctattccat |
46305481 |
T |
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| Q |
117 |
gttcttt |
123 |
Q |
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||||||| |
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| T |
46305480 |
gttcttt |
46305474 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 218 - 252
Target Start/End: Complemental strand, 46305416 - 46305382
Alignment:
| Q |
218 |
tgatgaactaaggcttaagatgttttaccatgtct |
252 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
46305416 |
tgatgaactaaggcttaagatgttttaccatgtct |
46305382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0172 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0172
Description:
Target: scaffold0172; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 68 - 134
Target Start/End: Original strand, 27183 - 27249
Alignment:
| Q |
68 |
cacccgtgaagctagccattttcatattggttgggatcaagtcttccatgttctttcccggcttctt |
134 |
Q |
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||||| |||||||||||||||||||||| || |||| |||||||||||||| || ||| ||||||| |
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| T |
27183 |
cacccatgaagctagccattttcatattagtagggactaagtcttccatgtttttacccagcttctt |
27249 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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