View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18449_low_6 (Length: 281)

Name: NF18449_low_6
Description: NF18449
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18449_low_6
NF18449_low_6
[»] chr3 (4 HSPs)
chr3 (1-281)||(8382989-8383269)
chr3 (1-48)||(21479083-21479130)
chr3 (1-39)||(14747535-14747573)
chr3 (1-33)||(40052312-40052344)
[»] chr5 (3 HSPs)
chr5 (1-39)||(2436896-2436934)
chr5 (1-45)||(31084291-31084335)
chr5 (1-33)||(11685919-11685951)
[»] chr1 (6 HSPs)
chr1 (1-63)||(17831578-17831640)
chr1 (1-62)||(3490437-3490498)
chr1 (84-128)||(43609827-43609870)
chr1 (1-39)||(10475024-10475062)
chr1 (83-123)||(17080895-17080934)
chr1 (83-119)||(35253672-35253708)
[»] chr2 (1 HSPs)
chr2 (1-39)||(38117206-38117244)
[»] scaffold0019 (1 HSPs)
scaffold0019 (1-33)||(71703-71735)
[»] chr4 (1 HSPs)
chr4 (100-128)||(50299089-50299117)


Alignment Details
Target: chr3 (Bit Score: 228; Significance: 1e-126; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 281
Target Start/End: Complemental strand, 8383269 - 8382989
Alignment:
Q  1 tattagcggtgtcggcgtgtcagtgtc-gtgtccagtgtcta-tgtccgtgtctgtgctacatagacactggcacatcctcaaaaataataatttgagaa 98  Q
    |||||||||||||||||||||| |||| |||||  ||||| | |||||||||| ||||||||||||| ||| ||||||||||||||||||||||||||||    
T  8383269 tattagcggtgtcggcgtgtcaatgtccgtgtc--gtgtccagtgtccgtgtccgtgctacatagaccctgacacatcctcaaaaataataatttgagaa 8383172  T
Q  99 taataacataattgaatataatcacatgtgctgccgtgtaagtatcagactatgaagcacaagacacatacatggacagtggacacgaaatagaaattga 198  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  8383171 taataacataattgaatataatcacatgtgctgccgtgtaagtatcagactatgaagcacaagacacatacatggacagtggacacgaaatagaaactga 8383072  T
Q  199 cacgtcgacacacataaaatatgaagacagtgatataattcaacgtaatcacgtgcatcagacatcatcaggacacatcttcc 281  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8383071 cacgtcgacacagataaaatatgaagacagtgatataattcaacgtaatcacgtgcatcagacatcatcaggacacatcttcc 8382989  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 21479130 - 21479083
Alignment:
Q  1 tattagcggtgtcggcgtgtcagtgtcgtgtccagtgtctatgtccgt 48  Q
    ||||||| ||||||||||||||||||||||||| |||||  |||||||    
T  21479130 tattagctgtgtcggcgtgtcagtgtcgtgtccggtgtccgtgtccgt 21479083  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 14747573 - 14747535
Alignment:
Q  1 tattagcggtgtcggcgtgtcagtgtcgtgtccagtgtc 39  Q
    ||||||| ||||||||||||||||||||||||| |||||    
T  14747573 tattagctgtgtcggcgtgtcagtgtcgtgtccggtgtc 14747535  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 40052344 - 40052312
Alignment:
Q  1 tattagcggtgtcggcgtgtcagtgtcgtgtcc 33  Q
    ||||||| |||||||||||||||||||||||||    
T  40052344 tattagctgtgtcggcgtgtcagtgtcgtgtcc 40052312  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 2436934 - 2436896
Alignment:
Q  1 tattagcggtgtcggcgtgtcagtgtcgtgtccagtgtc 39  Q
    ||||||||||||||||||||||||||||||||| |||||    
T  2436934 tattagcggtgtcggcgtgtcagtgtcgtgtccggtgtc 2436896  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 31084335 - 31084291
Alignment:
Q  1 tattagcggtgtcggcgtgtcagtgtcgtgtccagtgtctatgtc 45  Q
    ||||||| ||||||||||||||||||||||||| ||||| |||||    
T  31084335 tattagctgtgtcggcgtgtcagtgtcgtgtccggtgtccatgtc 31084291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 11685951 - 11685919
Alignment:
Q  1 tattagcggtgtcggcgtgtcagtgtcgtgtcc 33  Q
    |||||||||||||||| ||||||||||||||||    
T  11685951 tattagcggtgtcggcatgtcagtgtcgtgtcc 11685919  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 17831578 - 17831640
Alignment:
Q  1 tattagcggtgtcggcgtgtcagtgtcgtgtccagtgtctatgtccgtgtctgtgctacatag 63  Q
    ||||||||||||||||||||||||||||| ||| |||||| |||| || || ||||| |||||    
T  17831578 tattagcggtgtcggcgtgtcagtgtcgtatccggtgtctgtgtctgtatccgtgcttcatag 17831640  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 3490437 - 3490498
Alignment:
Q  1 tattagcggtgtcggcgtgtcagtgtcgtgtccagtgtctatgtccgtgtctgtgctacata 62  Q
    ||||||| ||||||||||||||||||||||||| |||||| | ||||| || ||||| ||||    
T  3490437 tattagcagtgtcggcgtgtcagtgtcgtgtccggtgtctgtatccgtatccgtgcttcata 3490498  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 84 - 128
Target Start/End: Complemental strand, 43609870 - 43609827
Alignment:
Q  84 ataataatttgagaataataacataattgaatataatcacatgtg 128  Q
    ||||||||||||||| |||||||||||||||| ||||||||||||    
T  43609870 ataataatttgagaa-aataacataattgaatgtaatcacatgtg 43609827  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 10475024 - 10475062
Alignment:
Q  1 tattagcggtgtcggcgtgtcagtgtcgtgtccagtgtc 39  Q
    |||||||||||||||||||||| |||||||||| |||||    
T  10475024 tattagcggtgtcggcgtgtcaatgtcgtgtccggtgtc 10475062  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 83 - 123
Target Start/End: Complemental strand, 17080934 - 17080895
Alignment:
Q  83 aataataatttgagaataataacataattgaatataatcac 123  Q
    |||||||||||||||| |||||||||||||||| |||||||    
T  17080934 aataataatttgagaa-aataacataattgaatgtaatcac 17080895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 83 - 119
Target Start/End: Original strand, 35253672 - 35253708
Alignment:
Q  83 aataataatttgagaataataacataattgaatataa 119  Q
    |||||||||||||||| ||| ||||||||||||||||    
T  35253672 aataataatttgagaaaaatgacataattgaatataa 35253708  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 38117206 - 38117244
Alignment:
Q  1 tattagcggtgtcggcgtgtcagtgtcgtgtccagtgtc 39  Q
    ||||||| ||||||||||||||||||||||||| |||||    
T  38117206 tattagctgtgtcggcgtgtcagtgtcgtgtccggtgtc 38117244  T

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Target: scaffold0019 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 71735 - 71703
Alignment:
Q  1 tattagcggtgtcggcgtgtcagtgtcgtgtcc 33  Q
    ||||||| |||||||||||||||||||||||||    
T  71735 tattagctgtgtcggcgtgtcagtgtcgtgtcc 71703  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 100 - 128
Target Start/End: Original strand, 50299089 - 50299117
Alignment:
Q  100 aataacataattgaatataatcacatgtg 128  Q
    |||||||||||||||||||||||||||||    
T  50299089 aataacataattgaatataatcacatgtg 50299117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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