View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1844_low_1 (Length: 424)
Name: NF1844_low_1
Description: NF1844
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1844_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 383; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 8 - 406
Target Start/End: Complemental strand, 40227274 - 40226876
Alignment:
| Q |
8 |
cgaagaatattattaatataggtaaaattaggtacgccccttaatgaaacaaaacataattgaggtagatgggaaggatccaacgttaaaaatggtccat |
107 |
Q |
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| T |
40227274 |
cgaaaaatattattaatataggtaaaattaggtacgccccttaatgaaacaaaacataattgaggtagatgggaaggatccaacgttaaaaatggtccat |
40227175 |
T |
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| Q |
108 |
gaaaaattaatagttgtcattatttactattatgaatccataaaagagttctccttctgttagctggcatgataaattggaacctaagaaaaaccaccta |
207 |
Q |
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| T |
40227174 |
gaaaaattaatagttgtcattatttactattatgaatccataaaagagttctccttctgttagctggcatgataaattggaacctaagaaaaaccaccta |
40227075 |
T |
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| Q |
208 |
aaatcctatattgaggaaacaactttatataatgacacaattagtatgtttgacaaagtcataatttcttttcctaactatggcctttgaagaacaatga |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40227074 |
aaatcctatattgaggaaacaactttatataatgacacaattaggatgtttgacaaagtcataatttcttttcctaactatggcctttgaagaacaatga |
40226975 |
T |
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| Q |
308 |
aacattgccaatgtggcaaaaattctttcaagccaaaatttataggatcaattttgtttttatgatgggtaaaggtttgaattgaaaacatctagaatt |
406 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
40226974 |
aacattgccaatgtggcaaaaattctttcaagccaaaattcataggatcaattttgtttttatgatgggcaaaggtttgaattgaaaacatctagaatt |
40226876 |
T |
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