View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1844_low_2 (Length: 219)
Name: NF1844_low_2
Description: NF1844
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1844_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 186; Significance: 1e-101; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 14 - 203
Target Start/End: Original strand, 26192289 - 26192478
Alignment:
| Q |
14 |
aatactatatttgacgtttgaaccaataattgtgtcaacaaattcgagcatggactctagagaattggcacagatttttgtctcccctgtaacggtttcc |
113 |
Q |
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| T |
26192289 |
aatactatatttgacgtttgaaccaataattgtgtcaacaaattcgagcatggactctagagaattggcacagatttttgtctcccctgtaacggtttcc |
26192388 |
T |
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| Q |
114 |
ccttcgcactcttcaagtgctcctctcatggatttggcttgaggagatgcttcagggattgaaaagagttgaagaatacttgggagttgt |
203 |
Q |
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| T |
26192389 |
ccttcgcactcttcaagtgctcctctcatggatttggcttgaggagattcttcagggattgaaaagagttgaagaatacttgggagttgt |
26192478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 14 - 132
Target Start/End: Original strand, 26175317 - 26175435
Alignment:
| Q |
14 |
aatactatatttgacgtttgaaccaataattgtgtcaacaaattcgagcatggactctagagaattggcacagatttttgtctcccctgtaacggtttcc |
113 |
Q |
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| T |
26175317 |
aatactatatttgacgtttaaactaataattgtgtcaacaaattcaagcatgggctcttaagaattggcacagatctttgtctcccctgtaacggtttcc |
26175416 |
T |
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| Q |
114 |
ccttcgcactcttcaagtg |
132 |
Q |
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| T |
26175417 |
ccttcgcactcttcaagtg |
26175435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 32 - 203
Target Start/End: Original strand, 26162231 - 26162402
Alignment:
| Q |
32 |
tgaaccaataattgtgtcaacaaattcgagcatggactctagagaattggcacagatttttgtctcccctgtaacggtttccccttcgcactcttcaagt |
131 |
Q |
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| T |
26162231 |
tgaaccaatgatcgtgtcaacaaattcgagcatggactctagggagtttacacaagtctttgtctcccctgtaatggtttccgcttcacactgttcaagt |
26162330 |
T |
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| Q |
132 |
gctcctctcatggatttggcttgaggagatgcttcagggattgaaaagagttgaagaatacttgggagttgt |
203 |
Q |
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| T |
26162331 |
gatcctaacatggatttagcttgaggagaatcttcagggattgagaaaagttgaaaaacacttgggagttgt |
26162402 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 32 - 203
Target Start/End: Original strand, 26180028 - 26180199
Alignment:
| Q |
32 |
tgaaccaataattgtgtcaacaaattcgagcatggactctagagaattggcacagatttttgtctcccctgtaacggtttccccttcgcactcttcaagt |
131 |
Q |
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| T |
26180028 |
tgaaccaaagatcgtgttaacaaattcgagcatggactctagagagttggcacaagtctttgtctcccctgtaatggtttccgattcacactctccaagt |
26180127 |
T |
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| Q |
132 |
gctcctctcatggatttggcttgaggagatgcttcagggattgaaaagagttgaagaatacttgggagttgt |
203 |
Q |
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| T |
26180128 |
gaatttatcatggatttagcttgaggagaatcttcagggattgataagagttgaagaacacttggaagttgt |
26180199 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 128 - 203
Target Start/End: Original strand, 26176214 - 26176289
Alignment:
| Q |
128 |
aagtgctcctctcatggatttggcttgaggagatgcttcagggattgaaaagagttgaagaatacttgggagttgt |
203 |
Q |
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| T |
26176214 |
aagtgctcctctcatggatttggtttgaagagattctttagggattgaaaagagttgaagaatacttgggagttgt |
26176289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 33 - 203
Target Start/End: Original strand, 25929249 - 25929419
Alignment:
| Q |
33 |
gaaccaataattgtgtcaacaaattcgagcatggactctagagaattggcacagatttttgtctcccctgtaacggtttccccttcgcactcttcaagtg |
132 |
Q |
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| T |
25929249 |
gaaccaattattttgtcaacaaattcaagcatggactctatagagttggcacaggtcttggactcccctgtgacgggttctgcttgacattgctcaagtg |
25929348 |
T |
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| Q |
133 |
ctcctctcatggatttggcttgaggagatgcttcagggattgaaaagagttgaagaatacttgggagttgt |
203 |
Q |
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| T |
25929349 |
tttctctcattgattttgcttgaggagagtcttcggggattgaaaggagttcgagaacacttgggagttgt |
25929419 |
T |
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