View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18450_high_1 (Length: 845)
Name: NF18450_high_1
Description: NF18450
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18450_high_1 |
 | |
|
| [»] scaffold0496 (1 HSPs) |
| | |
|
| [»] scaffold0754 (1 HSPs) |
| | |
|
| [»] scaffold0563 (5 HSPs) |
| | |
|
| [»] scaffold0492 (1 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 491; Significance: 0; HSPs: 9)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 491; E-Value: 0
Query Start/End: Original strand, 255 - 829
Target Start/End: Original strand, 46627060 - 46627646
Alignment:
| Q |
255 |
ttatggaacaagtgatacttgaaacaaaaaa-gttgtggttcaagtggctaggctcaccaggcatattgggctagaagtgcagcggtcagttatccctcc |
353 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
46627060 |
ttatggaacaagtgatacttgaaacaaaaaaagttgtggttcaagtggctaggctcaccaggcatattgggctagaagtgcagcggccagttatccctcc |
46627159 |
T |
|
| Q |
354 |
act----gtcaagagccggaggtgtttgctgctctgtgaaaccagcctcacacagtgccctccagtctaag------accaaggagactcaagccttcgc |
443 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||| |
|
|
| T |
46627160 |
actcactgtcaagagccggaggtgtttgctgctctgtgaaaccagcctcacacagtgccctccagtctaggtctaggaccaaggagactcaagccttcgc |
46627259 |
T |
|
| Q |
444 |
ctaggtcccattggcc-aactctcaacttggagcgggcaggccggcatggtgcagccaccaatccaacctagctaatcctaagccatgttccatcacctg |
542 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||| || ||||||||||||||||||||||||| |
|
|
| T |
46627260 |
ctaggtcccattggcccaactctcaacttggagcgggcaggccggcatggtgcagccaccaacccaacctggcaaatcctaagccatgttccatcacctt |
46627359 |
T |
|
| Q |
543 |
catgcccccacttgggttacaagttgaagttacccaactcggcaagctggcagccttgtcagaaggttatatagacttatttctttcatgaaatactcga |
642 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||| |
|
|
| T |
46627360 |
catgcccccacttgagttacaagttgaagttacccagctcggcaagctggcagccttgtcagaagattatatagaattatttctttcatgaaatactcga |
46627459 |
T |
|
| Q |
643 |
tgtgggacttctaaatgttaactaaaacttcttccccttccaccatgttcaactttcattgctggcctaagcttttgaattaagatgctatgctaatttt |
742 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46627460 |
tgtgggacttctaaatgttaactaaaacttcttccccttccaccatgttcaactttcattgctggcctaagcttttgaattaagatgctatgctaatttt |
46627559 |
T |
|
| Q |
743 |
attgctgtaggcttcattgtgtttatgcctgtgaactctccctttaagactgtcctaactcccacacacatatatgttagaggaaga |
829 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46627560 |
attgctgtaggcttcattgtgtttatgcctgtgaactctccctttaagactgtcctaactcccacacacatatatgttagaggaaga |
46627646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 257 - 758
Target Start/End: Original strand, 46621341 - 46621849
Alignment:
| Q |
257 |
atggaacaagtgatacttgaaacaaaaaagttgtggttcaagtggctaggctcaccaggcatattgggctagaagtgcagcggtcagttatccctccact |
356 |
Q |
| |
|
|||||| |||||| ||||||||||||||||| |||||||| |||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||| |
|
|
| T |
46621341 |
atggaagaagtgacacttgaaacaaaaaagtggtggttcaggtggctaggctcaccaggcatattggactagaagtgcagcggccagttatccctccact |
46621440 |
T |
|
| Q |
357 |
gtcaagagccggaggtgtttgctgctctgtgaaaccagcctcacacagtgccctccagtctaagaccaaggagactcaagccttcgcctaggtcccattg |
456 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
46621441 |
gtcaagagacggaggtgtttgctgctctgtgaaaccagcctcacacagtgccctccagtctaggaccaaggagactcaagccttcgcctaggtcacattg |
46621540 |
T |
|
| Q |
457 |
gccaactctcaacttggagcgggcaggccggcatggtgcagccaccaatccaacctagctaatcctaagccatgttccatcacctgcatgcccccacttg |
556 |
Q |
| |
|
||||||||||||||||||| ||||||||| |||||||||||||||||| ||||||| || |||| |||||||||||||||||||| |||||||||||||| |
|
|
| T |
46621541 |
gccaactctcaacttggagtgggcaggccagcatggtgcagccaccaacccaacctggcaaatcttaagccatgttccatcaccttcatgcccccacttg |
46621640 |
T |
|
| Q |
557 |
ggttacaagttgaagttacccaactcggcaagctggcagccttgtcagaaggttatatagacttatttctttcatgaaatactcgatgtgggacttctaa |
656 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||| ||||||||| ||||||||||||||||||| |
|
|
| T |
46621641 |
ggttacaagttgaagttacccaactcggcaagctggcagccttgccagaagtttatatagacttatttctatcatgaaattctcgatgtgggacttctaa |
46621740 |
T |
|
| Q |
657 |
atgttaactaaaacttcttccccttccacca-------tgttcaactttcattgctggcctaagcttttgaattaagatgctatgctaattttattgctg |
749 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
46621741 |
atgttaactaaaacttcttccccttccaccatgttcattgttcaactttcattgctcacctaagcttttgaattaagatgctatgctaattttattgatg |
46621840 |
T |
|
| Q |
750 |
taggcttca |
758 |
Q |
| |
|
|||| |||| |
|
|
| T |
46621841 |
taggtttca |
46621849 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 235; E-Value: 1e-129
Query Start/End: Original strand, 1 - 256
Target Start/End: Original strand, 46626660 - 46626917
Alignment:
| Q |
1 |
tggaaacatatagagggaaagtgaaaaggagtgactcttatttcacagtcaatcttgtgtgatttatagtctgcactctactctatctcgtttgtggtgt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46626660 |
tggaaacatatagagggaaagtgaaaaggagtgactcttatttcacagtcaaccttgtgtgatttatagtctgcactctactctatctcgtttgtggtgt |
46626759 |
T |
|
| Q |
101 |
ccacagcaaaataagacttgaagttaaaaagattattgtcacataaattgacagaaaaaccagaaacaatagtttatgactttatgtcattttgtcaggg |
200 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46626760 |
caacagcaaaataagacttgaagttaaaaagattattgtcacataaattgaccgaaaaaccagaaacaatagtttatgactttatgtcattttgtcaggg |
46626859 |
T |
|
| Q |
201 |
taagagaagtatgcactacaaatctgcaattaacatc--aacactcctggctaatctt |
256 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
46626860 |
taagagaagtatgcactacaaatctgcaattaacatcaaaacactcctggctaatctt |
46626917 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 93; E-Value: 8e-45
Query Start/End: Original strand, 544 - 672
Target Start/End: Complemental strand, 46429052 - 46428924
Alignment:
| Q |
544 |
atgcccccacttgggttacaagttgaagttacccaactcggcaagctggcagccttgtcagaaggttatatagacttatttctttcatgaaatactcgat |
643 |
Q |
| |
|
||||||||| ||||||||||||||| |||||||||||| ||||| || ||||||||||||||||||||| |||||||||||||||||||||||| |||| |
|
|
| T |
46429052 |
atgcccccagttgggttacaagttggggttacccaactcagcaagttgacagccttgtcagaaggttataaagacttatttctttcatgaaatacacgat |
46428953 |
T |
|
| Q |
644 |
gtgggacttctaaatgttaactaaaactt |
672 |
Q |
| |
|
|||||||||||||| |||||||||||||| |
|
|
| T |
46428952 |
gtgggacttctaaaagttaactaaaactt |
46428924 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 277 - 500
Target Start/End: Original strand, 15800305 - 15800527
Alignment:
| Q |
277 |
aacaaaaaagttgtggttcaagtggctaggctcaccaggcatattgggctagaagtgcagcggtcagttatccctccactgtcaagagccggaggtgttt |
376 |
Q |
| |
|
||||||||||| ||||||| | ||||||||||| | ||| || ||| || ||||||||| | | || ||||||||||||||| ||||| ||||| || |
|
|
| T |
15800305 |
aacaaaaaagtgatggttca-gaggctaggctcagcgggcttaatggactgaaagtgcagcagcccgtaatccctccactgtcaggagccagaggtattc |
15800403 |
T |
|
| Q |
377 |
gctgctctgtgaaaccagcctcacacagtgccctccagtctaagaccaaggagactcaagccttcgcctaggtcccattggccaactctcaacttggagc |
476 |
Q |
| |
|
|||||||||||||||||||||||| | | ||||| ||||| || | | ||||| | |||||||| | ||||| | | ||||||||||||||||||| |
|
|
| T |
15800404 |
gctgctctgtgaaaccagcctcacgccattccctctcgtctaggaaccaagagacataggccttcgcacaagtcccgtggaccaactctcaacttggagc |
15800503 |
T |
|
| Q |
477 |
gggcaggccggcatggtgcagcca |
500 |
Q |
| |
|
||||||||| |||| |||||||| |
|
|
| T |
15800504 |
gggcaggccagcatattgcagcca |
15800527 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 300 - 400
Target Start/End: Original strand, 15829911 - 15830011
Alignment:
| Q |
300 |
ggctaggctcaccaggcatattgggctagaagtgcagcggtcagttatccctccactgtcaagagccggaggtgtttgctgctctgtgaaaccagcctca |
399 |
Q |
| |
|
||||||||||||| ||| || ||| || |||||||||| | | || |||||||||||| ||||| ||||| || ||||||||||||||||||||||| |
|
|
| T |
15829911 |
ggctaggctcaccgggcttagtggactggaagtgcagcagcctgtagtccctccactgttgggagccagaggtattcgctgctctgtgaaaccagcctca |
15830010 |
T |
|
| Q |
400 |
c |
400 |
Q |
| |
|
| |
|
|
| T |
15830011 |
c |
15830011 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 300 - 400
Target Start/End: Original strand, 15831639 - 15831739
Alignment:
| Q |
300 |
ggctaggctcaccaggcatattgggctagaagtgcagcggtcagttatccctccactgtcaagagccggaggtgtttgctgctctgtgaaaccagcctca |
399 |
Q |
| |
|
||||||||||||| ||| || ||| || |||||||||| | | || |||||||||||| ||||| ||||| || ||||||||||||||||||||||| |
|
|
| T |
15831639 |
ggctaggctcaccgggcttagtggactggaagtgcagcagcctgtagtccctccactgttgggagccagaggtattcgctgctctgtgaaaccagcctca |
15831738 |
T |
|
| Q |
400 |
c |
400 |
Q |
| |
|
| |
|
|
| T |
15831739 |
c |
15831739 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 300 - 400
Target Start/End: Original strand, 15833366 - 15833466
Alignment:
| Q |
300 |
ggctaggctcaccaggcatattgggctagaagtgcagcggtcagttatccctccactgtcaagagccggaggtgtttgctgctctgtgaaaccagcctca |
399 |
Q |
| |
|
||||||||||||| ||| || ||| || |||||||||| | | || |||||||||||| ||||| ||||| || ||||||||||||||||||||||| |
|
|
| T |
15833366 |
ggctaggctcaccgggcttagtggactggaagtgcagcagcctgtagtccctccactgttgggagccagaggtattcgctgctctgtgaaaccagcctca |
15833465 |
T |
|
| Q |
400 |
c |
400 |
Q |
| |
|
| |
|
|
| T |
15833466 |
c |
15833466 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 300 - 411
Target Start/End: Original strand, 15828285 - 15828396
Alignment:
| Q |
300 |
ggctaggctcaccaggcatattgggctagaagtgcagcggtcagttatccctccactgtcaagagccggaggtgtttgctgctctgtgaaaccagcctca |
399 |
Q |
| |
|
||||||||||||| ||| || ||| | ||||||||| | | || ||| ||||||||||| |||| ||||| || |||||| |||||||||||||||| |
|
|
| T |
15828285 |
ggctaggctcaccgggcttaatggacagaaagtgcagcagcctgtaatcactccactgtcaggagctagaggtattcgctgctttgtgaaaccagcctca |
15828384 |
T |
|
| Q |
400 |
cacagtgccctc |
411 |
Q |
| |
|
|||| ||||||| |
|
|
| T |
15828385 |
cacattgccctc |
15828396 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 272 - 804
Target Start/End: Complemental strand, 37147781 - 37147237
Alignment:
| Q |
272 |
cttgaaacaaaaaagttgtggttcaagtggctaggctcaccaggcatattgggctagaagtgcagcggtcagttatccctccactgtcaagagccggagg |
371 |
Q |
| |
|
||||||||||||| || |||||||| || |||||||||||||||| | |||||||| |||||||| | | |||||||||||||||||||||| ||| | |
|
|
| T |
37147781 |
cttgaaacaaaaa-gtggtggttcatgtagctaggctcaccaggctttgtgggctagcagtgcagcagcctgttatccctccactgtcaagaggcggcag |
37147683 |
T |
|
| Q |
372 |
tgtttgctgctctgtgaaaccagcctcacacagtgccctccagtctaagaccaaggagactcaagccttcgcctaggtcccattggccaactctcaactt |
471 |
Q |
| |
|
| | ||||||||||||| |||||||||| |||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37147682 |
tactcgctgctctgtgaagccagcctcacgcagtgcccgccagtctaggaccaaggagactcaagccttcgcctaggtcccattggccaactctcaactt |
37147583 |
T |
|
| Q |
472 |
ggagcgggcaggccggcatggtgcagccaccaatccaacctagctaatcctaagccatgttccatcacctgcatgcccccacttgggttacaagttgaag |
571 |
Q |
| |
|
|||| ||||||||| ||||||||||||||| || ||||||| || ||||||||||||||||||| ||| | ||||||||||||||||||||||||| | |
|
|
| T |
37147582 |
ggagtgggcaggccagcatggtgcagccactaacccaacctggcaaatcctaagccatgttccaccacattgttgcccccacttgggttacaagttgatg |
37147483 |
T |
|
| Q |
572 |
ttacccaactcggcaagctggcagccttgtcagaaggttatatagacttatttctttcatgaaatactcgatgtgggacttctaaatgttaactaaaact |
671 |
Q |
| |
|
||| |||||||||||||||| |||||||||| ||| ||||| ||||| ||||||| ||||||||| ||||||||||||| ||||||| |||||||||| |
|
|
| T |
37147482 |
ttatccaactcggcaagctgatagccttgtcataagattataaagactagtttcttttatgaaatacacgatgtgggacttataaatgtaaactaaaact |
37147383 |
T |
|
| Q |
672 |
tcttccccttccaccatgttcaactttcattgctggcctaagcttttgaatta------agatgctatgctaattttattgctgt--------aggcttc |
757 |
Q |
| |
|
||||||||||||| |||||| ||||||||||||||| ||||||||||||||| | || |||||| ||||||||||||| ||||||| |
|
|
| T |
37147382 |
tcttccccttccattatgttc-actttcattgctggcttaagcttttgaattaaatgttatattatatgcttattttattgctgtaggtttcaaggcttc |
37147284 |
T |
|
| Q |
758 |
attgtgtttatgcctgtgaactctccctttaagactgtcctaactcc |
804 |
Q |
| |
|
||| |||||| || | ||| |||||| |||||||||||||||||||| |
|
|
| T |
37147283 |
attatgtttaagcgtttgagctctccttttaagactgtcctaactcc |
37147237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 58; Significance: 6e-24; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 300 - 481
Target Start/End: Complemental strand, 22654425 - 22654244
Alignment:
| Q |
300 |
ggctaggctcaccaggcatattgggctagaagtgcagcggtcagttatccctccactgtcaagagccggaggtgtttgctgctctgtgaaaccagcctca |
399 |
Q |
| |
|
|||||||||||||| || || ||| |||||| ||||| | |||||||||||||| ||||||||| ||||| || |||||| |||||||||||||||| |
|
|
| T |
22654425 |
ggctaggctcaccaagcttaatggactagaaccgcagcagcttgttatccctccactatcaagagccagaggtattcgctgctatgtgaaaccagcctca |
22654326 |
T |
|
| Q |
400 |
cacagtgccctccagtctaagaccaaggagactcaagccttcgcctaggtcccattggccaactctcaacttggagcgggca |
481 |
Q |
| |
|
||||||||||| | |||| || | | ||||| | ||||||||| | |||| | | |||||||||||||||||||||||| |
|
|
| T |
22654325 |
cacagtgccctttaatctaggaaccaagagaccaaggccttcgcccaaatcccgtggcccaactctcaacttggagcgggca |
22654244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 343 - 481
Target Start/End: Original strand, 37328116 - 37328254
Alignment:
| Q |
343 |
gttatccctccactgtcaagagccggaggtgtttgctgctctgtgaaaccagcctcacacagtgccctccagtctaagaccaaggagactcaagccttcg |
442 |
Q |
| |
|
|||||||||||||||||||||||| ||||| || ||||||||| |||||||||||||| |||||||||| ||||| || | | ||||| | ||||||| |
|
|
| T |
37328116 |
gttatccctccactgtcaagagccagaggtcttcgctgctctgcgaaaccagcctcacgcagtgccctctcgtctaggaaccaagagaccaaggccttcg |
37328215 |
T |
|
| Q |
443 |
cctaggtcccattggccaactctcaacttggagcgggca |
481 |
Q |
| |
|
|| | |||| | | |||||||||||||||||| ||||| |
|
|
| T |
37328216 |
cccaaatcccgtggcccaactctcaacttggagagggca |
37328254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 346 - 568
Target Start/End: Original strand, 38848834 - 38849055
Alignment:
| Q |
346 |
atccctccactgtcaagagccggaggtgtttgctgctctgtgaaaccagcctcacacagtgccctccagtctaagaccaaggagactcaagccttcgcct |
445 |
Q |
| |
|
||||||||||||||||||| ||| ||||| |||||||||||||||||||||| | | ||||||| |||| | | |||||| ||||||||| |
|
|
| T |
38848834 |
atccctccactgtcaagagaaggaagtgttcactgctctgtgaaaccagcctcatgcggatccctccattctagggaccaggagatctgtgccttcgcca |
38848933 |
T |
|
| Q |
446 |
aggtcccattggccaactctcaacttggagcgggcaggccggcatggtgcagccaccaatccaacctagctaatcctaagccatgttccatcacctgcat |
545 |
Q |
| |
|
|| |||||| | |||||||||||||||||||||||||||| |||| ||| | || || ||||||| | ||| | |||||||||||||||||| || |
|
|
| T |
38848934 |
agatcccatggcccaactctcaacttggagcgggcaggccagcatagtgtatcctacagcccaacct-gttaagacacagccatgttccatcaccttgat |
38849032 |
T |
|
| Q |
546 |
gcccccacttgggttacaagttg |
568 |
Q |
| |
|
|| ||||| |||||||||||||| |
|
|
| T |
38849033 |
gctcccacatgggttacaagttg |
38849055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 421 - 536
Target Start/End: Original strand, 39174088 - 39174203
Alignment:
| Q |
421 |
accaaggagactcaagccttcgcctaggtcccattggccaactctcaacttggagcgggcaggccggcatggtgcagccaccaatccaacctagctaatc |
520 |
Q |
| |
|
||||||||||||| || |||||||||||||| ||||||||||||||||||| || || |||||| | |||||||||| | ||| ||||| | || ||| |
|
|
| T |
39174088 |
accaaggagactcgagtcttcgcctaggtccttttggccaactctcaacttgaagtggacaggccagtatggtgcagctatcaacccaacttggcaaatt |
39174187 |
T |
|
| Q |
521 |
ctaagccatgttccat |
536 |
Q |
| |
|
||||||||| |||||| |
|
|
| T |
39174188 |
ctaagccattttccat |
39174203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 279 - 481
Target Start/End: Complemental strand, 38807663 - 38807461
Alignment:
| Q |
279 |
caaaaaagttgtggttcaagtggctaggctcaccaggc-atattgggctagaagtgcagcggtcagttatccctccactgtcaagagccggaggtgtttg |
377 |
Q |
| |
|
||||||||| |||||||| ||||||||||||||||| |||| | | |||| |||||| | | || |||||||||||||| |||| ||| ||||| |
|
|
| T |
38807663 |
caaaaaagtgatggttcaatgggctaggctcaccaggctatatggaccgagaa-tgcagcagcctgtaatccctccactgtcgagagaaggaagtgttca |
38807565 |
T |
|
| Q |
378 |
ctgctctgtgaaaccagcctcacacagtgccctccagtctaagaccaaggagactcaagccttcgcctaggtcccattggccaactctcaacttggagcg |
477 |
Q |
| |
|
|||||||||||||||||||||| | || |||||| |||| | | ||||||| |||||||||| | |||||| | |||||||||||||||||| | |
|
|
| T |
38807564 |
ctgctctgtgaaaccagcctcatgcggttccctccgttctagggaccaggagacctgagccttcgcccaaatcccatggcccaactctcaacttggagtg |
38807465 |
T |
|
| Q |
478 |
ggca |
481 |
Q |
| |
|
|||| |
|
|
| T |
38807464 |
ggca |
38807461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 346 - 490
Target Start/End: Original strand, 38865820 - 38865964
Alignment:
| Q |
346 |
atccctccactgtcaagagccggaggtgtttgctgctctgtgaaaccagcctcacacagtgccctccagtcta-agaccaaggagactcaagccttcgcc |
444 |
Q |
| |
|
||||||||||||||||||| ||| ||||| ||||||||| |||||||||||| | | ||||||| |||| |||| |||||| |||||||||| |
|
|
| T |
38865820 |
atccctccactgtcaagagaaggaagtgttcactgctctgtaaaaccagcctcatgcggatccctccattctagtgacc-aggagatctgagccttcgcc |
38865918 |
T |
|
| Q |
445 |
taggtcccattggccaactctcaacttggagcgggcaggccggcat |
490 |
Q |
| |
|
| |||||| | |||||||||||||||||| ||||||||| |||| |
|
|
| T |
38865919 |
caaatcccatggcccaactctcaacttggagtgggcaggccagcat |
38865964 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 346 - 399
Target Start/End: Original strand, 39310566 - 39310619
Alignment:
| Q |
346 |
atccctccactgtcaagagccggaggtgtttgctgctctgtgaaaccagcctca |
399 |
Q |
| |
|
||||||||||||||||||| ||| ||||| |||||||||||||||||||||| |
|
|
| T |
39310566 |
atccctccactgtcaagagaaggaagtgttcactgctctgtgaaaccagcctca |
39310619 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 346 - 568
Target Start/End: Complemental strand, 38750268 - 38750047
Alignment:
| Q |
346 |
atccctccactgtcaagagccggaggtgtttgctgctctgtgaaaccagcctcacacagtgccctccagtcta-agaccaaggagactcaagccttcgcc |
444 |
Q |
| |
|
||||||||||||||||||| ||| ||| | |||||||||||||||||||||| | | |||||| |||| |||| |||||| |||||||||| |
|
|
| T |
38750268 |
atccctccactgtcaagagaaggaagtgatcactgctctgtgaaaccagcctcatgcggatccctccgttctagtgacc-aggagatctgagccttcgcc |
38750170 |
T |
|
| Q |
445 |
taggtcccattggccaactctcaacttggagcgggcaggccggcatggtgcagccaccaatccaacctagctaatcctaagccatgttccatcacctgca |
544 |
Q |
| |
|
| |||||| | |||||||||||||||||| ||||||||| |||| || | || || ||||||| | ||| | |||||||||||||||||| | |
|
|
| T |
38750169 |
caaatcccatggcccaactctcaacttggagtgggcaggccagcataatgtaccctacagcccaacct-gttaagacacagccatgttccatcaccttga |
38750071 |
T |
|
| Q |
545 |
tgcccccacttgggttacaagttg |
568 |
Q |
| |
|
||| ||||| |||||||||||||| |
|
|
| T |
38750070 |
tgctcccacatgggttacaagttg |
38750047 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0496 (Bit Score: 41; Significance: 0.00000000000008; HSPs: 1)
Name: scaffold0496
Description:
Target: scaffold0496; HSP #1
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 438 - 582
Target Start/End: Original strand, 12299 - 12443
Alignment:
| Q |
438 |
cttcgcctaggtcccattggccaactctcaacttggagcgggcaggccggcatggtgcagccaccaatccaacctagctaatcctaagccatgttccatc |
537 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||| || |||||| |||| ||| || || ||| ||||| | | |||| | || ||||||| | | |
|
|
| T |
12299 |
cttcgcctaggtcccattgaccaactctcaacttggagtggtcaggccagcatagtgaagtcatcaacccaacatgacaaatctttagtcatgttctacc |
12398 |
T |
|
| Q |
538 |
acctgcatgcccccacttgggttacaagttgaagttacccaactc |
582 |
Q |
| |
|
| || |||||||||||| | |||||||||| |||| ||||||| |
|
|
| T |
12399 |
atcttgatgcccccacttagattacaagttggtgttatccaactc |
12443 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0754 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0754
Description:
Target: scaffold0754; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 300 - 400
Target Start/End: Complemental strand, 4012 - 3912
Alignment:
| Q |
300 |
ggctaggctcaccaggcatattgggctagaagtgcagcggtcagttatccctccactgtcaagagccggaggtgtttgctgctctgtgaaaccagcctca |
399 |
Q |
| |
|
||||||||||||| ||| || ||| || |||||||||| | | || |||||||||||| ||||| ||||| || ||||||||||||||||||||||| |
|
|
| T |
4012 |
ggctaggctcaccgggcttagtggactggaagtgcagcagcctgtagtccctccactgttgggagccagaggtattcgctgctctgtgaaaccagcctca |
3913 |
T |
|
| Q |
400 |
c |
400 |
Q |
| |
|
| |
|
|
| T |
3912 |
c |
3912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0563 (Bit Score: 37; Significance: 0.00000000002; HSPs: 5)
Name: scaffold0563
Description:
Target: scaffold0563; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 300 - 400
Target Start/End: Complemental strand, 10544 - 10444
Alignment:
| Q |
300 |
ggctaggctcaccaggcatattgggctagaagtgcagcggtcagttatccctccactgtcaagagccggaggtgtttgctgctctgtgaaaccagcctca |
399 |
Q |
| |
|
||||||||||||| ||| || ||| || |||||||||| | | || |||||||||||| ||||| ||||| || ||||||||||||||||||||||| |
|
|
| T |
10544 |
ggctaggctcaccgggcttagtggactggaagtgcagcagcctgtagtccctccactgttgggagccagaggtattcgctgctctgtgaaaccagcctca |
10445 |
T |
|
| Q |
400 |
c |
400 |
Q |
| |
|
| |
|
|
| T |
10444 |
c |
10444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0563; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 300 - 400
Target Start/End: Complemental strand, 862 - 762
Alignment:
| Q |
300 |
ggctaggctcaccaggcatattgggctagaagtgcagcggtcagttatccctccactgtcaagagccggaggtgtttgctgctctgtgaaaccagcctca |
399 |
Q |
| |
|
||||||||||||| ||| || ||| || |||||||||| | | || |||||||||||| ||||| ||||| || ||||||||||||||||| ||||| |
|
|
| T |
862 |
ggctaggctcaccgggcttagtggactggaagtgcagcagcctgtagtccctccactgttgggagccagaggtattcgctgctctgtgaaaccaacctca |
763 |
T |
|
| Q |
400 |
c |
400 |
Q |
| |
|
| |
|
|
| T |
762 |
c |
762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0563; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 300 - 400
Target Start/End: Original strand, 3255 - 3355
Alignment:
| Q |
300 |
ggctaggctcaccaggcatattgggctagaagtgcagcggtcagttatccctccactgtcaagagccggaggtgtttgctgctctgtgaaaccagcctca |
399 |
Q |
| |
|
||||||||||||| ||| || ||| || |||||||||| | | || |||||||||||| ||||| || || || ||||||||||||||||||||||| |
|
|
| T |
3255 |
ggctaggctcaccgggcttagtggactggaagtgcagcagcctgtagtccctccactgttgggagccagaagtattcgctgctctgtgaaaccagcctca |
3354 |
T |
|
| Q |
400 |
c |
400 |
Q |
| |
|
| |
|
|
| T |
3355 |
c |
3355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0563; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 300 - 400
Target Start/End: Original strand, 5083 - 5183
Alignment:
| Q |
300 |
ggctaggctcaccaggcatattgggctagaagtgcagcggtcagttatccctccactgtcaagagccggaggtgtttgctgctctgtgaaaccagcctca |
399 |
Q |
| |
|
||||||||||||| ||| || ||| || |||||||||| | | || |||||||||||| ||||| || || || ||||||||||||||||||||||| |
|
|
| T |
5083 |
ggctaggctcaccgggcttagtggactggaagtgcagcagcctgtagtccctccactgttgggagccagaagtattcgctgctctgtgaaaccagcctca |
5182 |
T |
|
| Q |
400 |
c |
400 |
Q |
| |
|
| |
|
|
| T |
5183 |
c |
5183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0563; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 300 - 400
Target Start/End: Complemental strand, 7679 - 7579
Alignment:
| Q |
300 |
ggctaggctcaccaggcatattgggctagaagtgcagcggtcagttatccctccactgtcaagagccggaggtgtttgctgctctgtgaaaccagcctca |
399 |
Q |
| |
|
||||||||||||| ||| || ||| || |||||||||| | | || |||||||||||| ||||| || || || ||||||||||||||||||||||| |
|
|
| T |
7679 |
ggctaggctcaccgggcttagtggactggaagtgcagcagcctgtagtccctccactgttgggagccagaagtattcgctgctctgtgaaaccagcctca |
7580 |
T |
|
| Q |
400 |
c |
400 |
Q |
| |
|
| |
|
|
| T |
7579 |
c |
7579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0492 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0492
Description:
Target: scaffold0492; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 300 - 400
Target Start/End: Complemental strand, 904 - 804
Alignment:
| Q |
300 |
ggctaggctcaccaggcatattgggctagaagtgcagcggtcagttatccctccactgtcaagagccggaggtgtttgctgctctgtgaaaccagcctca |
399 |
Q |
| |
|
||||||||||||| ||| || ||| || |||||||||| | | || |||||||||||| ||||| ||||| || ||||||||||||||||||||||| |
|
|
| T |
904 |
ggctaggctcaccgggcttagtggactggaagtgcagcagcctgtagtccctccactgttgggagccagaggtattcgctgctctgtgaaaccagcctca |
805 |
T |
|
| Q |
400 |
c |
400 |
Q |
| |
|
| |
|
|
| T |
804 |
c |
804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 290 - 400
Target Start/End: Original strand, 43396134 - 43396244
Alignment:
| Q |
290 |
tggttcaagtggctaggctcaccaggcatattgggctagaagtgcagcggtcagttatccctccactgtcaagagccggaggtgtttgctgctctgtgaa |
389 |
Q |
| |
|
||||||||| |||||||||||| ||| || |||| | || | ||||||| || |||| ||||||| || ||| ||||||||||| ||||||||||| |
|
|
| T |
43396134 |
tggttcaaggggctaggctcactaggtattatgggttggaggggcagcggcatgtgatccttccactgccaggagtaggaggtgtttgttgctctgtgaa |
43396233 |
T |
|
| Q |
390 |
accagcctcac |
400 |
Q |
| |
|
|||||||||| |
|
|
| T |
43396234 |
tccagcctcac |
43396244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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