View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18450_low_2 (Length: 512)
Name: NF18450_low_2
Description: NF18450
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18450_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 480; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 480; E-Value: 0
Query Start/End: Original strand, 9 - 496
Target Start/End: Complemental strand, 1081023 - 1080536
Alignment:
| Q |
9 |
gagcagcacagactctaaataacctgctacagatggttcaaaaatcaaaacactcatccctcggtgcccatgtggaccatatgagtgtcgagccttcaat |
108 |
Q |
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| T |
1081023 |
gagctgcacagactctaaataacctgctacagatggttcaaaaatcaaaacactcatccctcggtgcccatgtggaccatatgagtgtcgagccttcaat |
1080924 |
T |
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| Q |
109 |
gcaccgtaatcactgaagcaatcaaggagttcttgattccccattcctgtccactacaattcaactcagtgaggttaaactacagaggaacttcacatta |
208 |
Q |
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| T |
1080923 |
gcaccgtaatcactgaagcaatcaaggagttcttgattccccattcctgtccactacaattcaactcagtgaggttaaactacagaggaacttcacatta |
1080824 |
T |
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| Q |
209 |
gataaattaaaagaaaatcacaaaaggactaagactcttataggagatacgaaaatttgtttaataattaatgaagtaaaaattcaacaactagctgcaa |
308 |
Q |
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| T |
1080823 |
gataaattaaaagaaaatcacaaaaggactaagactcttataggagatacgaaaatttgtttaacaattaatgaagtaaaaattcaacaactagctgcaa |
1080724 |
T |
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| Q |
309 |
tgtgtatgcgatttaaaaacaaataaaaggaaatagactaagactacatatatatttcatcaaattagaagacaagaaaatatattgtaccttgttgttt |
408 |
Q |
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| T |
1080723 |
tgtgtatgcgatttaaaaacaaataaaaggaaatagactaagactacatatatatttcatcaaattagaagacaagaaaatatattgtaccttgttgttt |
1080624 |
T |
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| Q |
409 |
tcatcctgctcgtatttcgtattcataatgacaaccattggaggccaaacaatttcacgatccttaactttgttatcgagaccctccc |
496 |
Q |
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| T |
1080623 |
tcatcctgctcgtatttcgtattcataatgacaaccattggaggccaaacaatttcacgatccttaactttgttatcgagaccctccc |
1080536 |
T |
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Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 45 - 98
Target Start/End: Original strand, 44839254 - 44839307
Alignment:
| Q |
45 |
ttcaaaaatcaaaacactcatccctcggtgcccatgtggaccatatgagtgtcg |
98 |
Q |
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| T |
44839254 |
ttcaaacatcaaaacactcatccctcgatgaccattagggccatatgagtgtcg |
44839307 |
T |
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