View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18450_low_4 (Length: 318)

Name: NF18450_low_4
Description: NF18450
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18450_low_4
NF18450_low_4
[»] chr8 (2 HSPs)
chr8 (1-259)||(27185320-27185578)
chr8 (199-254)||(4555607-4555662)
[»] chr7 (1 HSPs)
chr7 (67-259)||(5104600-5104795)
[»] chr6 (2 HSPs)
chr6 (66-259)||(29974082-29974279)
chr6 (212-259)||(3244597-3244644)
[»] chr2 (3 HSPs)
chr2 (82-142)||(21647522-21647582)
chr2 (82-142)||(3934503-3934565)
chr2 (218-259)||(21647395-21647436)
[»] scaffold0393 (1 HSPs)
scaffold0393 (82-142)||(10764-10826)
[»] chr5 (2 HSPs)
chr5 (82-142)||(3175091-3175153)
chr5 (215-259)||(4222331-4222375)
[»] chr4 (1 HSPs)
chr4 (82-142)||(45144866-45144928)
[»] chr1 (2 HSPs)
chr1 (215-259)||(6901999-6902043)
chr1 (86-142)||(47192663-47192719)


Alignment Details
Target: chr8 (Bit Score: 255; Significance: 1e-142; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 1 - 259
Target Start/End: Complemental strand, 27185578 - 27185320
Alignment:
Q  1 accggtgtgtctcttgttgttttggctgggtttccgtgctgctcttgttgtttgttgctcgggcaggtgctctttgggtctttcgggagtgaggcagggg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27185578 accggtgtgtctcttgttgttttggctgggtttccgtgctgctcttgttgtttgttgctcgggcaggtgctctttgggtctttcgggagtgaggcagggg 27185479  T
Q  101 tatgcttgccccatgcaagtatacttcagcctcactgtttgaagccttgggtttgggtgttctgtgtatgtgcggcacctttgtatgtttaccgtttatt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27185478 tatgcttgccccatgcaagtatacttcagcctcactgtttgaagccttgggtttgggtgttctgtgtatgtgcggcacctttgtatgtttaccgtttatt 27185379  T
Q  201 ttatccgcgagttgttgtgcgtcttgcatacactcgacgtgaataatatttgccgtttc 259  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27185378 ttatctgcgagttgttgtgcgtcttgcatacactcgacgtgaataatatttgccgtttc 27185320  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 199 - 254
Target Start/End: Complemental strand, 4555662 - 4555607
Alignment:
Q  199 ttttatccgcgagttgttgtgcgtcttgcatacactcgacgtgaataatatttgcc 254  Q
    ||||||||||||||| |||||||  |||||||||||||||  |||||| |||||||    
T  4555662 ttttatccgcgagtttttgtgcgctttgcatacactcgactagaataaaatttgcc 4555607  T

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Target: chr7 (Bit Score: 76; Significance: 4e-35; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 67 - 259
Target Start/End: Original strand, 5104600 - 5104795
Alignment:
Q  67 gtgctctttgggtctttcgggagtgaggcaggggtatgcttgccccatgcaagtatacttcagcctcactgtttgaagccttgggtt-tgggtgttctgt 165  Q
    |||||| |||||| ||||||| |||||||||||||||||| ||||  | ||||||||  || ||||||||||||||  |||||||||  |||||||| ||    
T  5104600 gtgctccttgggtttttcgggggtgaggcaggggtatgctcgccctttacaagtatatctcggcctcactgtttgataccttgggttcagggtgttccgt 5104699  T
Q  166 gtatgtgcggca-cctttgtatgtttaccgtttattttatccgcgag-ttgttgtgcgtcttgcatacactcgacgtgaataatatttgccgtttc 259  Q
    |||||||||||| ||||||||||| | | |||| || |||||||||| |||||||||  ||||||| | || ||||||||||||||||||||||||    
T  5104700 gtatgtgcggcaccctttgtatgtcttctgttttttctatccgcgagtttgttgtgcaccttgcattcccttgacgtgaataatatttgccgtttc 5104795  T

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Target: chr6 (Bit Score: 54; Significance: 5e-22; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 66 - 259
Target Start/End: Original strand, 29974082 - 29974279
Alignment:
Q  66 ggtgctctttgggtctttcgggagtgaggcaggggtatgcttgccccatgcaagtatacttcagcctcactgtttgaagccttgggtt-tgggtgttctg 164  Q
    ||||||| |||||  ||||| | |||||||||||||||||| ||||  | ||||||||  ||  |||||||||||||  |||||||||  || ||||| |    
T  29974082 ggtgctccttggggttttcgagggtgaggcaggggtatgctcgccctttacaagtatatctcgacctcactgtttgataccttgggttcaggatgttccg 29974181  T
Q  165 tgtatgtgcggca-cctttgtatgtttaccgtttattt-tatccgcgagt-tgttgtgcgtcttgcatacactcgacgtgaataatatttgccgtttc 259  Q
    ||||||||||||| ||||||||||| | | |||| ||| ||||||| ||| ||||||||  ||||||| | ||||||||||||||||||| |||||||    
T  29974182 tgtatgtgcggcaccctttgtatgtcttctgtttttttctatccgcaagtatgttgtgcaccttgcattcgctcgacgtgaataatatttaccgtttc 29974279  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 212 - 259
Target Start/End: Complemental strand, 3244644 - 3244597
Alignment:
Q  212 ttgttgtgcgtcttgcatacactcgacgtgaataatatttgccgtttc 259  Q
    |||||||||| ||||||||| ||||| |||||||||||| ||||||||    
T  3244644 ttgttgtgcgccttgcatactctcgatgtgaataatattagccgtttc 3244597  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 82 - 142
Target Start/End: Complemental strand, 21647582 - 21647522
Alignment:
Q  82 ttcgggagtgaggcaggggtatgcttgccccatgcaagtatacttcagcctcactgtttga 142  Q
    |||||||||||||||| |||||||||| | |||||||||||| |||||||||| |||||||    
T  21647582 ttcgggagtgaggcagtggtatgcttgactcatgcaagtatatttcagcctcattgtttga 21647522  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 82 - 142
Target Start/End: Complemental strand, 3934565 - 3934503
Alignment:
Q  82 ttcgggagtgaggcaggggtatgcttgccccatgcaag--tatacttcagcctcactgtttga 142  Q
    |||||||||||||||||||||||||||| | |||| ||  |||||||| |||||| |||||||    
T  3934565 ttcgggagtgaggcaggggtatgcttgctctatgctagtatatacttcggcctcattgtttga 3934503  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 218 - 259
Target Start/End: Complemental strand, 21647436 - 21647395
Alignment:
Q  218 tgcgtcttgcatacactcgacgtgaataatatttgccgtttc 259  Q
    |||||||||||||  |||||||||||||||||||||| ||||    
T  21647436 tgcgtcttgcatattctcgacgtgaataatatttgccatttc 21647395  T

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Target: scaffold0393 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0393
Description:

Target: scaffold0393; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 82 - 142
Target Start/End: Complemental strand, 10826 - 10764
Alignment:
Q  82 ttcgggagtgaggcaggggtatgcttgccccatgcaag--tatacttcagcctcactgtttga 142  Q
    |||||||||||||||||||||||||||| | |||| ||  |||||||| |||||| |||||||    
T  10826 ttcgggagtgaggcaggggtatgcttgctctatgctagtatatacttcggcctcattgtttga 10764  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 82 - 142
Target Start/End: Original strand, 3175091 - 3175153
Alignment:
Q  82 ttcgggagtgaggcaggggtatgcttgccccatgcaag--tatacttcagcctcactgtttga 142  Q
    |||||||||||||||||||||||||||| | |||| ||  |||||||| |||||| |||||||    
T  3175091 ttcgggagtgaggcaggggtatgcttgctctatgctagtatatacttcggcctcattgtttga 3175153  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 215 - 259
Target Start/End: Complemental strand, 4222375 - 4222331
Alignment:
Q  215 ttgtgcgtcttgcatacactcgacgtgaataatatttgccgtttc 259  Q
    ||||||||||||||||  ||||||| |||||||||||||| ||||    
T  4222375 ttgtgcgtcttgcataatctcgacgagaataatatttgccttttc 4222331  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 82 - 142
Target Start/End: Original strand, 45144866 - 45144928
Alignment:
Q  82 ttcgggagtgaggcaggggtatgcttgccccatgcaag--tatacttcagcctcactgtttga 142  Q
    |||||||||||||||||||||||||||| | |||| ||  |||||||| |||||| |||||||    
T  45144866 ttcgggagtgaggcaggggtatgcttgctctatgctagtatatacttcggcctcattgtttga 45144928  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 215 - 259
Target Start/End: Original strand, 6901999 - 6902043
Alignment:
Q  215 ttgtgcgtcttgcatacactcgacgtgaataatatttgccgtttc 259  Q
    |||||||||||||||| |||||||| ||||||| |||||| ||||    
T  6901999 ttgtgcgtcttgcatatactcgacgagaataatgtttgccatttc 6902043  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 86 - 142
Target Start/End: Original strand, 47192663 - 47192719
Alignment:
Q  86 ggagtgaggcaggggtatgcttgccccatgcaagtatacttcagcctcactgtttga 142  Q
    |||||||| ||||||||||||||| | |||| |||||||||| |||| | |||||||    
T  47192663 ggagtgagacaggggtatgcttgctctatgctagtatacttcggccttattgtttga 47192719  T

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