View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18450_low_6 (Length: 229)
Name: NF18450_low_6
Description: NF18450
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18450_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 170; Significance: 2e-91; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 33 - 214
Target Start/End: Complemental strand, 24413922 - 24413741
Alignment:
| Q |
33 |
gagtgaaaatgagtcttacttatgactgttgatatgccaagtcctagtccaatgaatgagtatgtaaaggacattagtgcagcaacaaccgaaacccaag |
132 |
Q |
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| T |
24413922 |
gagtgaaaatgagtcttacttatgactgttgatatgccaagtcctagtccaatgaatgagtatgtaaaggacattagtgcggcaacaactgaaacccaag |
24413823 |
T |
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| Q |
133 |
ccatgttatggagatccggtatgaatgacattacaatctgaacaactccaaacaacaccatatatatattagcctcatatct |
214 |
Q |
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| T |
24413822 |
ccatgttatggagatccggtatgaacgacattacaatctgaacaactccaaacaacaccatatatatattagcctcatatct |
24413741 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 33 - 208
Target Start/End: Complemental strand, 24401346 - 24401171
Alignment:
| Q |
33 |
gagtgaaaatgagtcttacttatgactgttgatatgccaagtcctagtccaatgaatgagtatgtaaaggacattagtgcagcaacaaccgaaacccaag |
132 |
Q |
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| T |
24401346 |
gagtgaagatgagccttacttatgactgttgctatgccaagtcctagtccaatgaatgagtatgtaaaggacattagtgcggcaacaactgaaacccaag |
24401247 |
T |
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| Q |
133 |
ccatgttatggagatccggtatgaatgacattacaatctgaacaactccaaacaacaccatatatatattagcctc |
208 |
Q |
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| T |
24401246 |
ccatgttatggagatccggtatgaacgacattacaatctgaacaactccaaacagcaccatatatatattagcctc |
24401171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 33 - 186
Target Start/End: Original strand, 24420039 - 24420192
Alignment:
| Q |
33 |
gagtgaaaatgagtcttacttatgactgttgatatgccaagtcctagtccaatgaatgagtatgtaaaggacattagtgcagcaacaaccgaaacccaag |
132 |
Q |
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| T |
24420039 |
gagtgaaaatgagtcttacttatgactgttgatatgccaagtcctagtccaatgaatgagtatgtaaaggacattagtgcagcaacaaccgaaacccaag |
24420138 |
T |
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| Q |
133 |
ccatgttatggagatccggtatgaatgacattacaatctgaacaactccaaaca |
186 |
Q |
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| T |
24420139 |
ccatgttatggagatccggtatgaacgacattacaatctgaacaagtccaaaca |
24420192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 33 - 186
Target Start/End: Complemental strand, 24378512 - 24378359
Alignment:
| Q |
33 |
gagtgaaaatgagtcttacttatgactgttgatatgccaagtcctagtccaatgaatgagtatgtaaaggacattagtgcagcaacaaccgaaacccaag |
132 |
Q |
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||||||| ||||| ||||||||||||||||| |||||||||||| |||||||||||||| || ||||||||||||| |||||||||||| |||||||| | |
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| T |
24378512 |
gagtgaagatgagacttacttatgactgttgctatgccaagtccaagtccaatgaatgaataagtaaaggacattattgcagcaacaactgaaacccatg |
24378413 |
T |
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| Q |
133 |
ccatgttatggagatccggtatgaatgacattacaatctgaacaactccaaaca |
186 |
Q |
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|||| |||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24378412 |
tcatgctatgaagatccggtatgaatgacattacaatctgaacaactccaaaca |
24378359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 68 - 186
Target Start/End: Complemental strand, 42361723 - 42361605
Alignment:
| Q |
68 |
gccaagtcctagtccaatgaatgagtatgtaaaggacattagtgcagcaacaaccgaaacccaagccatgttatggagatccggtatgaatgacattaca |
167 |
Q |
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|||||||||||||||||| ||||||||||||||||||| | || |||||||| |||| | | |||||||| ||||| || |||||||||||||||| |
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| T |
42361723 |
gccaagtcctagtccaatagatgagtatgtaaaggacataacagctgcaacaactgaaagcaatgccatgttgtggaggtctggtatgaatgacattatg |
42361624 |
T |
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| Q |
168 |
atctgaacaactccaaaca |
186 |
Q |
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| T |
42361623 |
acctgaacaagtccaaaca |
42361605 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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