View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18451_high_3 (Length: 792)
Name: NF18451_high_3
Description: NF18451
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18451_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 699; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 699; E-Value: 0
Query Start/End: Original strand, 8 - 774
Target Start/End: Original strand, 1057511 - 1058278
Alignment:
| Q |
8 |
gaaatgaacccctaaacatgagcttttaccggccggttatatgtcattaat-gttcacagcatgttggannnnnnnnnnnnnnngtgactaaagcatgtt |
106 |
Q |
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| T |
1057511 |
gaaatgaagccctaaccatgagcttttaccggccggttatatgtcattaattgttcacagcatgttgaattttttttattttttgtgactaaagcatgtt |
1057610 |
T |
|
| Q |
107 |
ggtttatatgggcaagaactatggttaaaaatgaaaaacttgacaaaatctttactatctcaagaataaaataaacaactcaattcgctaggtgtctttc |
206 |
Q |
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| T |
1057611 |
ggtttatatgggcaagaactatggttaaaaatgaaaaacttgacaaaatctttactatctcaagaataaaataaacaactcaattcgctaggtgtctttc |
1057710 |
T |
|
| Q |
207 |
ttggaaattacagctgtacgactcaacttgaaggtaaagacccacatttggtgaaaacttcacaaacacacttgaccttgttttcttccatgactttgta |
306 |
Q |
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| T |
1057711 |
ttggaaattacagctgtacgactcaacttgaaggtaaagacccacatttggtgaaaacttcacaaacacacttgaccttgttttcttccatgactttgta |
1057810 |
T |
|
| Q |
307 |
cttaaatataaattcttcaacatataatgcatggtgattactaactagaaagatctatctcctctatacttcaactcaattgcagttaccctcaagttta |
406 |
Q |
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| T |
1057811 |
cttaaatataaattcttcaacatataatgcatggtgattactaactagaaagatctatctcctctatacttcaactcaattgcagttaccctcaagttta |
1057910 |
T |
|
| Q |
407 |
gtgtttcttgcaaataaggtagctcctataaatcaacaaaacttgaatcaaagaaaaagtttgtctctccatgcaagtaagcaaagtcatcatcaatcaa |
506 |
Q |
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| T |
1057911 |
gtgtttcttgcaaataaggtagctcctataaatcaacaaaacttgaatcaaagaaaaagtttgtctctccatgcaagtaagcaaagtcatcatcaatcaa |
1058010 |
T |
|
| Q |
507 |
acaaacttttgcacatagcttttattgtttgaaaaatttataaaaccctatatttaattttcttaaccctttatatattcttttaaattttgacaatttt |
606 |
Q |
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| T |
1058011 |
acaaacttttgcacatagcttttattgtttgaaaaatttataaaaccctatatttaattttcttaaccctttatatattcttttaaattttgacaatttt |
1058110 |
T |
|
| Q |
607 |
gaagctcgttcataaaacaacaactatttgtacatcatgacactttttgtgtgttattccagaaggacaaagaagttgttagtaaagaaaggaaggatat |
706 |
Q |
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| T |
1058111 |
aaagctcgttcataaaacaacaactatttgtacatcatgacactttttgtgtgttattccagaaggacaaagaagttgttagtaaagaaaggaaggatat |
1058210 |
T |
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| Q |
707 |
ggaaatggaaggaaatcgtgagaaagaggaaaccctacctcctggatttcgatttcatcctaccgatg |
774 |
Q |
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| T |
1058211 |
ggaaatggaaggaaatcgtgagaaagaggaaaccctacctcctggatttcgatttcatcctaccgatg |
1058278 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 729 - 774
Target Start/End: Complemental strand, 50581010 - 50580965
Alignment:
| Q |
729 |
aaagaggaaaccctacctcctggatttcgatttcatcctaccgatg |
774 |
Q |
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||||||||||||||||| || |||||||||||||||||||| |||| |
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| T |
50581010 |
aaagaggaaaccctaccaccgggatttcgatttcatcctacagatg |
50580965 |
T |
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