View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18451_high_4 (Length: 561)
Name: NF18451_high_4
Description: NF18451
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18451_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 545; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 545; E-Value: 0
Query Start/End: Original strand, 1 - 545
Target Start/End: Original strand, 10255092 - 10255636
Alignment:
| Q |
1 |
tcaccgcagcacgtgtcatatctggacaatacaatccttctaacggcattggtttagccaacacaagtttggctctgtttggtaacaaactttttgcttt |
100 |
Q |
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| T |
10255092 |
tcaccgcagcacgtgtcatatctggacaatacaatccttctaacggcattggtttagccaacacaagtttggctctgtttggtaacaaactttttgcttt |
10255191 |
T |
|
| Q |
101 |
aggagaatcagatcttccttatgaaatcaatcttacgccaaacggtgatatccaaacaattggccgttatgattttaacggtaaactctccatgagtatg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10255192 |
aggagaatcagatcttccttatgaaatcaatcttacgccaaacggtgatatccaaacaattggccgttatgattttaacggtaaactctccatgagtatg |
10255291 |
T |
|
| Q |
201 |
actgcacatccgaaaattgacggcgacacaggtgaaacttttgctttccgttacggtcctatgccaccatttttaacctatttccgttttgatgcaaatg |
300 |
Q |
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| T |
10255292 |
actgcacatccgaaaattgacggcgacacaggtgaaacttttgctttccgttacggtcctatgccaccatttttaacctatttccgttttgatgcaaatg |
10255391 |
T |
|
| Q |
301 |
gtgttaaacataacgacgttccggttttctccatgacaagaccttcttttcttcatgatttcgccattactaaaaaatacgctgtgtttacggatattca |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10255392 |
gtgttaaacataacgacgttccggttttctccatgacaagaccttcttttcttcatgatttcgccattactaaaaaatacgctgtgtttacggatattca |
10255491 |
T |
|
| Q |
401 |
gcttggaatgaatcctcttgacatgatttccggtggttctccggtaggttccgatccttcaaaggtttcaaggatcggaattctaccgagatatgctagt |
500 |
Q |
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| T |
10255492 |
gcttggaatgaatcctcttgacatgatttccggtggttctccggtaggttccgatccttcaaaggtttcaaggatcggaattctaccgagatatgctagt |
10255591 |
T |
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| Q |
501 |
gatgagtcgaagatgaaatggtttgatgtgccagggtttaatatt |
545 |
Q |
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| T |
10255592 |
gatgagtcgaagatgaaatggtttgatgtgccagggtttaatatt |
10255636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 39 - 545
Target Start/End: Complemental strand, 10230695 - 10230189
Alignment:
| Q |
39 |
tctaacggcattggtttagccaacacaagtttggctctgtttggtaacaaactttttgctttaggagaatcagatcttccttatgaaatcaatcttacgc |
138 |
Q |
| |
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|||||||||||||| || | |||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||| |||| || || | |
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| T |
10230695 |
tctaacggcattggattggtcaacacaagtttagctctgtttggtaaccgtctttttgctttaggagaatcagatcttccttatgaagtcaaactaacac |
10230596 |
T |
|
| Q |
139 |
caaacggtgatatccaaacaattggccgttatgattttaacggtaaactctccatgagtatgactgcacatccgaaaattgacggcgacacaggtgaaac |
238 |
Q |
| |
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| T |
10230595 |
caaacggtgacatccaaacaatgggccgttatgatttcaacggcaaactcttgatgagtatgacggcgcatcctaaaatagactctgacacaagtgaatg |
10230496 |
T |
|
| Q |
239 |
ttttgctttccgttacggtcctatgccaccatttttaacctatttccgttttgatgcaaatggtgttaaacataacgacgttccggttttctccatgaca |
338 |
Q |
| |
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||| ||||||||||| ||||| || | ||| |||||||||||||||||||||||| | |||||||||||||||||||||||||| || |||||||||| | |
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| T |
10230495 |
tttcgctttccgttatggtcccattcgaccttttttaacctatttccgttttgattcgaatggtgttaaacataacgacgttccagtattctccatgaaa |
10230396 |
T |
|
| Q |
339 |
agaccttcttttcttcatgatttcgccattactaaaaaatacgctgtgtttacggatattcagcttggaatgaatcctcttgacatgatttccggtggtt |
438 |
Q |
| |
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|||||||| |||||||||||||||||||||||||||||||| |||||||| | ||||| ||||||| |||||||||||||| |||||||| |||||||| |
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| T |
10230395 |
agaccttcgtttcttcatgatttcgccattactaaaaaatatgctgtgttcgctgatatacagcttgaaatgaatcctcttggcatgattttcggtggtt |
10230296 |
T |
|
| Q |
439 |
ctccggtaggttccgatccttcaaaggtttcaaggatcggaattctaccgagatatgctagtgatgagtcgaagatgaaatggtttgatgtgccagggtt |
538 |
Q |
| |
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||||||| | || ||||| || || ||||||||||||||||||||||| | ||||||| ||| ||||| |||||||| ||||||||||| |||||||| |
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| T |
10230295 |
ctccggtgagatcggatccatctaaagtttcaaggatcggaattctacctcgttatgctaatgacgagtccaagatgaagtggtttgatgttccagggtt |
10230196 |
T |
|
| Q |
539 |
taatatt |
545 |
Q |
| |
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||||||| |
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| T |
10230195 |
taatatt |
10230189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 41 - 545
Target Start/End: Complemental strand, 10239473 - 10238969
Alignment:
| Q |
41 |
taacggcattggtttagccaacacaagtttggctctgtttggtaacaaactttttgctttaggagaatcagatcttccttatgaaatcaatcttacgcca |
140 |
Q |
| |
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|||||||||||| || |||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||| |||| ||| |
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| T |
10239473 |
taacggcattggattgatcaacacaagtttggctctgtttggcaaccgtctttttgctttaggagaatcagatcttccttatgaaatcaaagttacacca |
10239374 |
T |
|
| Q |
141 |
aacggtgatatccaaacaattggccgttatgattttaacggtaaactctccatgagtatgactgcacatccgaaaattgacggcgacacaggtgaaactt |
240 |
Q |
| |
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|||||||||||||||||||| |||||||||||||||||||| ||||||| ||||| |||||| || ||||| ||||||||| ||||||||||||| || |
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| T |
10239373 |
aacggtgatatccaaacaataggccgttatgattttaacggcaaactcttcatgaatatgacggcgcatcctaaaattgactccgacacaggtgaatgtt |
10239274 |
T |
|
| Q |
241 |
ttgctttccgttacggtcctatgccaccatttttaacctatttccgttttgatgcaaatggtgttaaacataacgacgttccggttttctccatgacaag |
340 |
Q |
| |
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| |||| ||| ||||||| || | ||| |||||||||||||||||||||||| ||||||| |||||||| || |||||||| ||||||||||||| ||| |
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| T |
10239273 |
tcgcttaccgctacggtctcattcgaccttttttaacctatttccgttttgattcaaatggagttaaacacaatgacgttccagttttctccatgaaaag |
10239174 |
T |
|
| Q |
341 |
accttcttttcttcatgatttcgccattactaaaaaatacgctgtgtttacggatattcagcttggaatgaatcctcttgacatgatttccggtggttct |
440 |
Q |
| |
|
|||||||||||||||||||||||| ||||| |||||||||||| |||| | ||||| ||||||| ||| ||||||||||||||||||| ||||||||| |
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| T |
10239173 |
accttcttttcttcatgatttcgcaattacaaaaaaatacgctttgttcgctgatatacagcttgaaattaatcctcttgacatgattttcggtggttcc |
10239074 |
T |
|
| Q |
441 |
ccggtaggttccgatccttcaaaggtttcaaggatcggaattctaccgagatatgctagtgatgagtcgaagatgaaatggtttgatgtgccagggttta |
540 |
Q |
| |
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|||||| | |||||||| || || ||| ||||||||||||||||||| | |||||| | | |||||||||||||| ||||||||||| || ||| ||| |
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| T |
10239073 |
ccggtaaggtccgatccatcgaaagttccaaggatcggaattctacctcgttatgctgataacgagtcgaagatgaagtggtttgatgttcctgggctta |
10238974 |
T |
|
| Q |
541 |
atatt |
545 |
Q |
| |
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||||| |
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|
| T |
10238973 |
atatt |
10238969 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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