View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18451_high_5 (Length: 543)
Name: NF18451_high_5
Description: NF18451
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18451_high_5 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 470; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 470; E-Value: 0
Query Start/End: Original strand, 17 - 530
Target Start/End: Original strand, 32120845 - 32121358
Alignment:
| Q |
17 |
agtaactagtaataagtaacattttgatgtnnnnnnnngctaaatgttgcattacattaccatggagatgagattctaaggatcccataggcatgtattc |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32120845 |
agtaactagtaataagtaacattttgatgtaaaaaaaagctaaatgttgcattacattaccatggagatgagattctaaggatcccataggcatgtattc |
32120944 |
T |
|
| Q |
117 |
atagacaagaagtcgttgatcaccttccgcgcagtaaccaatcatactaacaaggttgggatggtgtagaagagagagcatgagaacctccactaaaaat |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32120945 |
atagacaagaagtcgttgatcaccttccgcgcagtaaccaatcatactaacaaggttgggatggtgtagaagagagagcatgagaacctccactaaaaat |
32121044 |
T |
|
| Q |
217 |
tctttctcaccttggaaaccagttgtatcaagtcttttaacagctacagcctgatcaaatgttccaaatcttttagtttaataaaatagttaaatcgtgt |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||| |
|
|
| T |
32121045 |
tctttctcaccttggaaaccagttgtatcaagtcttttaacagctacagcctgatcaaatgttccaaaccttttagtttaataaaatagttaaattgtgt |
32121144 |
T |
|
| Q |
317 |
tgcggatcagtttataagcatttcaaagaagaagcatgtaaaaatcgaccatcctttgaattatacctgaccagtgctacctagctttcctttgtaaaca |
416 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32121145 |
tgcggatcagtttataagcattgcaaagaagaagcatgtaaaaatcgtccatcctttgaattatacctgaccagtgctacctagctttcctttgtaaaca |
32121244 |
T |
|
| Q |
417 |
gttccaaatccaccttgcccaataaaggtttcatccctaaagttttttgttgccgtcgcaagttctctgaaggtatatatttgagctttattagaaatgt |
516 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
32121245 |
gttccaaatccaccttgcccaataaaggtttcatccctaaagttttttgttgccgtcgcaagttctctgaaggtaaatatttgagctttattagaaatgt |
32121344 |
T |
|
| Q |
517 |
cggtattctctgct |
530 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
32121345 |
cggtattctctgct |
32121358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University