View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18451_high_6 (Length: 426)

Name: NF18451_high_6
Description: NF18451
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18451_high_6
NF18451_high_6
[»] chr7 (3 HSPs)
chr7 (15-426)||(12078945-12079356)
chr7 (27-426)||(12095597-12095996)
chr7 (31-148)||(1249176-1249293)


Alignment Details
Target: chr7 (Bit Score: 404; Significance: 0; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 15 - 426
Target Start/End: Original strand, 12078945 - 12079356
Alignment:
Q  15 actaattactcacttacaagggggcaaaggagaaccacacaaacacttattatgcgaaaacgacgatggatcaaacccttgcaacttccctccgactgtc 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12078945 actaattactcacttacaagggggcaaaggagaaccacacaaacacttattatgcgaaaacgacgatggatcaaacccttgcaacttccctccgactgtc 12079044  T
Q  115 ggtataggaccacaaagttggttgttgctcacattgaagtcatacaacaatgacgcttggcctaaccaagctggcaactttccatatataaggttatttt 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12079045 ggtataggaccacaaagttggttgttgctcacattgaagtcatacaacaatgacgcttggcctaaccaagctggcaactttccatatataaggttatttt 12079144  T
Q  215 ccaaccgcaagaccagcaaattcgagtccagttgtcccactggcattaccaccttactgaggtcaaacgacagcttgtttcgcgacaagtccaggtgagc 314  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  12079145 ccaaccgcaagaccagcaaattcgagtccagttgtcccactggcattaccaccttaccgaggtcaaacgacagcttgtttcgcgacaagtccaggtgagc 12079244  T
Q  315 caactcagtcttatctttcccgaacaagaacgatgcatcaccggtcaaccggttcccagcagcctcgaaaatgctgaaattaactgtgcccaacgatctt 414  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  12079245 caactcagtcttatctttcccgaacaagaacgatgcatcaccggtcaaccggttcccagcagcctcgaaaatactgaaattaactgtgcccaacgatctt 12079344  T
Q  415 gggattggtccg 426  Q
    ||||||||||||    
T  12079345 gggattggtccg 12079356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 280; E-Value: 1e-156
Query Start/End: Original strand, 27 - 426
Target Start/End: Original strand, 12095597 - 12095996
Alignment:
Q  27 cttacaagggggcaaaggagaaccacacaaacacttattatgcgaaaacgacgatggatcaaacccttgcaacttccctccgactgtcggtataggacca 126  Q
    ||||||||| |||||||||||||||||||| | ||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||     
T  12095597 cttacaaggaggcaaaggagaaccacacaagcccttattatgcgaaaacgacgatggatcaaactcttgcaacttccctccaactgtcggtataggaccg 12095696  T
Q  127 caaagttggttgttgctcacattgaagtcatacaacaatgacgcttggcctaaccaagctggcaactttccatatataaggttattttccaaccgcaaga 226  Q
     |||| ||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| | ||||||||||||||| ||||    
T  12095697 aaaagctggttgtagctcacattgaagtcgtacaacaatgacgcttggcctaaccaagctggcaactttccgtatatcatgttattttccaaccgtaaga 12095796  T
Q  227 ccagcaaattcgagtccagttgtcccactggcattaccaccttactgaggtcaaacgacagcttgtttcgcgacaagtccaggtgagccaactcagtctt 326  Q
    | ||||||||||| ||||||||||||||||||||||||||||||  |||||| || |||| ||||||||||||||||||||| |||||||||||||||||    
T  12095797 caagcaaattcgattccagttgtcccactggcattaccaccttagagaggtcgaatgacaacttgtttcgcgacaagtccagatgagccaactcagtctt 12095896  T
Q  327 atctttcccgaacaagaacgatgcatcaccggtcaaccggttcccagcagcctcgaaaatgctgaaattaactgtgcccaacgatcttgggattggtccg 426  Q
    |  || |||||||||||| || ||||||||||||||| |||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||    
T  12095897 actttccccgaacaagaaagacgcatcaccggtcaactggttcccagcagcctcgaaaatactgaaattaactttgcccaacgatcttgggattggtccg 12095996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 31 - 148
Target Start/End: Complemental strand, 1249293 - 1249176
Alignment:
Q  31 caagggggcaaaggagaaccacacaaacacttattatgcgaaaacgacgatggatcaaacccttgcaacttccctccgactgtcggtataggaccacaaa 130  Q
    ||||||| ||| |||| |||||| ||||||||||||| |  |||| |||| ||||||||||||||||||||||||||  |  | ||||||||||||||||    
T  1249293 caaggggccaagggagcaccacataaacacttattattctcaaaccacgacggatcaaacccttgcaacttccctccatcctttggtataggaccacaaa 1249194  T
Q  131 gttggttgttgctcacat 148  Q
    | ||||||| ||||||||    
T  1249193 gctggttgtggctcacat 1249176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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