View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18451_low_2 (Length: 795)

Name: NF18451_low_2
Description: NF18451
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18451_low_2
NF18451_low_2
[»] chr3 (8 HSPs)
chr3 (184-782)||(48446390-48447006)
chr3 (18-149)||(48447009-48447140)
chr3 (617-778)||(14349621-14349782)
chr3 (617-779)||(13464493-13464655)
chr3 (628-674)||(7161294-7161340)
chr3 (623-672)||(2850458-2850507)
chr3 (707-765)||(7174840-7174898)
chr3 (619-669)||(27814926-27814976)
[»] chr4 (3 HSPs)
chr4 (196-314)||(38489400-38489518)
chr4 (619-779)||(38489938-38490101)
chr4 (455-533)||(38489722-38489800)
[»] chr1 (2 HSPs)
chr1 (581-759)||(43099309-43099491)
chr1 (449-509)||(43099623-43099683)
[»] chr7 (5 HSPs)
chr7 (611-758)||(47367631-47367781)
chr7 (617-671)||(39425390-39425444)
chr7 (617-671)||(39456796-39456850)
chr7 (617-672)||(39438492-39438547)
chr7 (460-506)||(47367401-47367445)


Alignment Details
Target: chr3 (Bit Score: 517; Significance: 0; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 517; E-Value: 0
Query Start/End: Original strand, 184 - 782
Target Start/End: Complemental strand, 48447006 - 48446390
Alignment:
Q  184 tgctagaaagaactcaattacccacttaacataaggcttttagcagtaaaaggattaataaaccatccaaaagctttgaaaattcttataagacatagta 283  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48447006 tgctagaaagaactcaattacccacttaacataaggcttttagcagtaaaaggattaataaaccatccaaaagctttgaaaattcttataagacatagta 48446907  T
Q  284 tccaattaaattgattcaagcaagcctttacaacccaaaacagaaataaagtgaggcatgcaacaaattattcatg--cctacatagacaagcatatgaa 381  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||  ||||||||||||||||||||||    
T  48446906 tccaattaaattgattcaagcaagcctttacaacccaaaacagaaataaagtgaggcatacaacaaattattcatgtgcctacatagacaagcatatgaa 48446807  T
Q  382 ttagacttaatatcctattctctcatacagaactgtttcaatgaacaagttctttagtctgatgtaaaacttggatttctttcatgtttcaagcaatcaa 481  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  48446806 ttagacttaatatcctattctctcatacagaactgtttcaatgaacaagttctttagtctgatgcaaaacttggatttctttcatgtttcaagcaatcaa 48446707  T
Q  482 ttaaaactcaaaatatatcatagttttatgttttatcactattcatagaatcaacaaccggaccat----------------aactcccnnnnnnnntct 565  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||                |||||||        |||    
T  48446706 ttaaaactcaaaatatatcatagttttatgttttatcactattcatagaaccaacaaccggaccataccatacaatagataaaactcccaaaaaaaatct 48446607  T
Q  566 ttcatgaatcacaaatacatgttcttcaaaaacatggcgtaactgtcatcctcaatcaaatagaagtttacatgttgtagagccccttgtgcatgaagat 665  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48446606 ttcatgaatcacaaatacatgttcttcaaaaacatggcgtaactgtcatcctcaatcaaatagaagtttacatgttgtagagccccttgtgcatgaagat 48446507  T
Q  666 aatttcagtttcattcggtcattttcaaggcaggtactctgaattgtcatggtctcgagtacgtttgaatgctgcataatatattttacaaatttgaact 765  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48446506 aatttcagtttcattcggtcattttcaaggcaggtactctgaattgtcatggtctcgagtacgtttgaatgctgcataatatattttacaaatttgaact 48446407  T
Q  766 cgtattctgtgcctatg 782  Q
    |||||||||||||||||    
T  48446406 cgtattctgtgcctatg 48446390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 120; E-Value: 6e-61
Query Start/End: Original strand, 18 - 149
Target Start/End: Complemental strand, 48447140 - 48447009
Alignment:
Q  18 gagacttgtagcatataccttagtccaagtgagtctatcagaaagaggataaaatatggccaattgctaaatcaaaataataataacatatcagaaatca 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  48447140 gagacttgtagcatataccttagtccaagtgagtctatcagaaagagtataaattatggccaattgctaaatcaaaataataataacatatcagaaatca 48447041  T
Q  118 aaccaagaccaagctcagacaactttttagca 149  Q
    |||||||||||||||||||||||||| |||||    
T  48447040 aaccaagaccaagctcagacaactttgtagca 48447009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 617 - 778
Target Start/End: Original strand, 14349621 - 14349782
Alignment:
Q  617 tcaatcaaatagaagtttacatgttgtagagccccttgtgcatgaagataatttcagtttcattcggtcattttcaaggcaggtactctgaattgtcatg 716  Q
    ||||||||||| |||||||||||||||||||||||||| ||||||||||| ||||||   |||| |||  ||||||||||||||||||| ||||||||||    
T  14349621 tcaatcaaataaaagtttacatgttgtagagccccttgagcatgaagatagtttcagcgacatttggtacttttcaaggcaggtactcttaattgtcatg 14349720  T
Q  717 gtctcgagtacgtttgaatgctgcataatatattttacaaatttgaactcgtattctgtgcc 778  Q
    || || ||||| |||||||||||||||||||||||| ||||||  ||||| |||| ||||||    
T  14349721 gtttctagtacttttgaatgctgcataatatattttgcaaattcaaactcatattttgtgcc 14349782  T

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Target: chr3; HSP #4
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 617 - 779
Target Start/End: Original strand, 13464493 - 13464655
Alignment:
Q  617 tcaatcaaatagaagtttacatgttgtagagccccttgtgcatgaagataatttcagtttcattcggtcattttcaaggcaggtactctgaattgtcatg 716  Q
    ||||||||||  |||||||||| ||||||||||||||| ||||||||||| ||||||   |||| |||  ||||||||||||||||||| ||||||||||    
T  13464493 tcaatcaaattaaagtttacatcttgtagagccccttgagcatgaagatagtttcagcgacatttggtacttttcaaggcaggtactcttaattgtcatg 13464592  T
Q  717 gtctcgagtacgtttgaatgctgcataatatattttacaaatttgaactcgtattctgtgcct 779  Q
    || || |||||||||||||||||||||||||||||| ||||||  ||||| |||| |||||||    
T  13464593 gtttctagtacgtttgaatgctgcataatatattttgcaaattcaaactcatattttgtgcct 13464655  T

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Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 628 - 674
Target Start/End: Original strand, 7161294 - 7161340
Alignment:
Q  628 gaagtttacatgttgtagagccccttgtgcatgaagataatttcagt 674  Q
    ||||||||||||||||||| |||||||||||||||||| ||||||||    
T  7161294 gaagtttacatgttgtagatccccttgtgcatgaagatgatttcagt 7161340  T

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Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 623 - 672
Target Start/End: Original strand, 2850458 - 2850507
Alignment:
Q  623 aaatagaagtttacatgttgtagagccccttgtgcatgaagataatttca 672  Q
    ||||| ||||||||||||||||| |||| ||||| |||||||||||||||    
T  2850458 aaataaaagtttacatgttgtagggcccattgtggatgaagataatttca 2850507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 707 - 765
Target Start/End: Original strand, 7174840 - 7174898
Alignment:
Q  707 aattgtcatggtctcgagtacgtttgaatgctgcataatatattttacaaatttgaact 765  Q
    ||||| ||||||||| ||||| || | || |||||||||||||||| ||||||||||||    
T  7174840 aattgccatggtctctagtacattagcattctgcataatatattttgcaaatttgaact 7174898  T

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Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 619 - 669
Target Start/End: Original strand, 27814926 - 27814976
Alignment:
Q  619 aatcaaatagaagtttacatgttgtagagccccttgtgcatgaagataatt 669  Q
    ||||||||| |||||||||||||||| | ||| ||||| ||||||||||||    
T  27814926 aatcaaataaaagtttacatgttgtaaaaccctttgtggatgaagataatt 27814976  T

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Target: chr4 (Bit Score: 63; Significance: 6e-27; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 196 - 314
Target Start/End: Original strand, 38489400 - 38489518
Alignment:
Q  196 ctcaattacccacttaacataaggcttttagcagtaaaaggattaataaaccatccaaaagctttgaaaattcttataagacatagtatccaattaaatt 295  Q
    ||||| ||| |||||||||||||| ||||||||||||||||  | ||||||||||||| | || ||||||||||||| ||||||  ||||||||||| ||    
T  38489400 ctcaagtacgcacttaacataagggttttagcagtaaaaggccttataaaccatccaacaactatgaaaattcttatgagacattatatccaattaattt 38489499  T
Q  296 gattcaagcaagcctttac 314  Q
    | |||||||||||||||||    
T  38489500 gtttcaagcaagcctttac 38489518  T

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Target: chr4; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 619 - 779
Target Start/End: Original strand, 38489938 - 38490101
Alignment:
Q  619 aatcaaatagaagtttacatgttgtagagcccc---ttgtgcatgaagataatttcagtttcattcggtcattttcaaggcaggtactctgaattgtcat 715  Q
    ||||||||| || |||||||| |||||||||||   || || ||||| ||||||||| |  || | |||| |||||||||||| | ||||||||| ||||    
T  38489938 aatcaaataaaattttacatgctgtagagcccccccttatgtatgaatataatttcactaacacttggtccttttcaaggcagtttctctgaattttcat 38490037  T
Q  716 ggtctcgagtacgtttgaatgctgcataatatattttacaaatttgaactcgtattctgtgcct 779  Q
    |||||| ||||| |||||||| ||||||||||||| | |||| | |||||| | || |||||||    
T  38490038 ggtctctagtacctttgaatggtgcataatatattctgcaaaatcgaactcatgttttgtgcct 38490101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 455 - 533
Target Start/End: Original strand, 38489722 - 38489800
Alignment:
Q  455 gatttctttcatgtttcaagcaatcaattaaaactcaaaatatatcatagttttatgttttatcactattcatagaatc 533  Q
    |||||| |||| |||||||||||||||||||||||||||||||||||||| ||||  ||||| || |||||||| ||||    
T  38489722 gatttcattcaagtttcaagcaatcaattaaaactcaaaatatatcatagctttacattttaccagtattcatataatc 38489800  T

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Target: chr1 (Bit Score: 56; Significance: 9e-23; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 581 - 759
Target Start/End: Complemental strand, 43099491 - 43099309
Alignment:
Q  581 tacatgttcttcaaaaa-catggcgtaactgtcatcctcaatcaaatagaagtttacatgttgtagagccccttgtgcatgaagataatttc-agtttca 678  Q
    |||||||| |||||||| ||||   ||| ||||||| ||||||||||| ||| ||||||||||||||||||||||| ||||| ||||||||| |    ||    
T  43099491 tacatgtttttcaaaaaacatgaaataattgtcatcgtcaatcaaataaaagcttacatgttgtagagccccttgtacatgatgataatttcaaaaaaca 43099392  T
Q  679 ttcggtcattttcaaggcagg--tactctgaattgtcatggtctcgagtacgtttgaatgctgcataatatattttacaaatt 759  Q
    || ||||  ||| | || |||  ||||||||||| |||| ||||| ||||| |||||||||||||||||||||||| ||||||    
T  43099391 tttggtccctttgagggtaggtatactctgaattttcatagtctctagtacttttgaatgctgcataatatattttgcaaatt 43099309  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 449 - 509
Target Start/End: Complemental strand, 43099683 - 43099623
Alignment:
Q  449 aacttggatttctttcatgtttcaagcaatcaattaaaactcaaaatatatcatagtttta 509  Q
    ||||| |||||||||||  ||||||||||||| ||||||||||||||||||| || |||||    
T  43099683 aacttagatttctttcaaatttcaagcaatcagttaaaactcaaaatatatcgtactttta 43099623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.00000000002; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 611 - 758
Target Start/End: Original strand, 47367631 - 47367781
Alignment:
Q  611 tcatcctcaatcaaatagaagtttacatgttgtagagccccttgtgcatgaagataa---tttcagtttcattcggtcattttcaaggcaggtactctga 707  Q
    ||||| ||||||||||| |||||||||  ||| ||||||||||||| ||||||||||   | |||    | || |||  ||| ||||| ||| | ||| |    
T  47367631 tcatcatcaatcaaataaaagtttacaatttggagagccccttgtggatgaagataatattctcaagaacttttggttctttgcaaggaaggaagtctta 47367730  T
Q  708 attgtcatggtctcgagtacgtttgaatgctgcataatatattttacaaat 758  Q
    |||||||||||||| ||||| |||||||| |||| |||||||||| |||||    
T  47367731 attgtcatggtctctagtacttttgaatgttgcacaatatattttgcaaat 47367781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 617 - 671
Target Start/End: Complemental strand, 39425444 - 39425390
Alignment:
Q  617 tcaatcaaatagaagtttacatgttgtagagccccttgtgcatgaagataatttc 671  Q
    ||||| ||||| |||||| |||||||||||||| ||||||| |||||||||||||    
T  39425444 tcaattaaataaaagtttgcatgttgtagagcctcttgtgcttgaagataatttc 39425390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 617 - 671
Target Start/End: Original strand, 39456796 - 39456850
Alignment:
Q  617 tcaatcaaatagaagtttacatgttgtagagccccttgtgcatgaagataatttc 671  Q
    ||||| ||||| |||||| |||||||||||||| ||||||| |||||||||||||    
T  39456796 tcaattaaataaaagtttgcatgttgtagagcctcttgtgcttgaagataatttc 39456850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 617 - 672
Target Start/End: Complemental strand, 39438547 - 39438492
Alignment:
Q  617 tcaatcaaatagaagtttacatgttgtagagccccttgtgcatgaagataatttca 672  Q
    ||||||||||| |||||||||||| |||||||| |||||  ||||||||| |||||    
T  39438547 tcaatcaaataaaagtttacatgtcgtagagcctcttgtatatgaagatagtttca 39438492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 460 - 506
Target Start/End: Original strand, 47367401 - 47367445
Alignment:
Q  460 ctttcatgtttcaagcaatcaattaaaactcaaaatatatcatagtt 506  Q
    |||||||||||||||||||||| ||||||||  ||||||||||||||    
T  47367401 ctttcatgtttcaagcaatcaactaaaactc--aatatatcatagtt 47367445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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