View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18451_low_9 (Length: 269)

Name: NF18451_low_9
Description: NF18451
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18451_low_9
NF18451_low_9
[»] chr1 (3 HSPs)
chr1 (18-269)||(9369447-9369698)
chr1 (37-269)||(9390673-9390905)
chr1 (18-224)||(9373932-9374134)


Alignment Details
Target: chr1 (Bit Score: 199; Significance: 1e-108; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 18 - 269
Target Start/End: Original strand, 9369447 - 9369698
Alignment:
Q  18 aagtttccgtgaaaaatagaagacagggagaggtattgacaaatatgttttatgatgacaattcgacgaacaattagtcttccaataaaccaatttcata 117  Q
    |||||||| ||||||||| |||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||    
T  9369447 aagtttccatgaaaaatataagaaagggagaggtattgacaaatatgttttatgatgacaattccacgaacaattagtcttccaataaatcaatttcata 9369546  T
Q  118 gtaaaatggtggaaacgggaaagaagcacagtaggaagtttcaannnnnnnatgagacaggaagtttcaatttgacataatggagtgggcagcaagggat 217  Q
    |||||||||||||||||||||||||||| |||||||||||||||       |||||||||||||||||| ||||||||||||||||||||||||||||||    
T  9369547 gtaaaatggtggaaacgggaaagaagcagagtaggaagtttcaatttttttatgagacaggaagtttcattttgacataatggagtgggcagcaagggat 9369646  T
Q  218 atgaaatatgagaaattagtgattacaggttcaaatttgtagttaatgattt 269  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  9369647 atgaaatatgagaaattagtgattacaggttcaaatttgcagttaatgattt 9369698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 37 - 269
Target Start/End: Original strand, 9390673 - 9390905
Alignment:
Q  37 aagacagggagaggtattgacaaatatgttttatgatgacaattcgacgaacaattagtcttccaataaaccaatttcatagtaaaatggtggaaacggg 136  Q
    |||| |||||||||||||||||||||| |||||||| |||||||||||||||||||||| ||| |||||||||||||||||||||||| |||||||||||    
T  9390673 aagaaagggagaggtattgacaaatatattttatgacgacaattcgacgaacaattagttttctaataaaccaatttcatagtaaaattgtggaaacggg 9390772  T
Q  137 aaagaagcacagtaggaagtttcaannnnnnnatgagacaggaagtttcaatttgacataatggagtgggcagcaagggatatgaaatatgagaaattag 236  Q
    ||||||||||||||||||||||||        ||  || ||||||||||| ||||||||||| ||||| | |||||| ||||||||||||||||||||||    
T  9390773 aaagaagcacagtaggaagtttcatttcttttatcggataggaagtttcagtttgacataattgagtgagaagcaagagatatgaaatatgagaaattag 9390872  T
Q  237 tgattacaggttcaaatttgtagttaatgattt 269  Q
    |||||||||||| ||||||||||||||||||||    
T  9390873 tgattacaggtttaaatttgtagttaatgattt 9390905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 18 - 224
Target Start/End: Original strand, 9373932 - 9374134
Alignment:
Q  18 aagtttccgtgaaaaatagaagacagggagaggtattgacaaatatgttttatgatgacaattcgacgaacaattagtcttccaataaaccaatttcata 117  Q
    ||||||| |||||| ||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||    
T  9373932 aagtttctgtgaaagatataagaaagggagaggtattgacaaatatgttttatgatgacaattcgacgaacaattagtcttctaataaaccaattccata 9374031  T
Q  118 gtaaaatggtggaaacgggaaagaagcacagtaggaagtttcaannnnnnnatgagacaggaagtttcaatttgacataatggagtgggcagcaagggat 217  Q
    ||||||||||||||||||||||||||| ||    ||||||||         || |  |||||||||||| ||||||||||| |||||||||||||| |||    
T  9374032 gtaaaatggtggaaacgggaaagaagcgca----gaagtttcgttttctttatcatgcaggaagtttcattttgacataatcgagtgggcagcaagagat 9374127  T
Q  218 atgaaat 224  Q
    |||||||    
T  9374128 atgaaat 9374134  T

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