View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18452_high_10 (Length: 398)
Name: NF18452_high_10
Description: NF18452
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18452_high_10 |
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Alignment Details
Target: chr8 (Bit Score: 331; Significance: 0; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 3 - 377
Target Start/End: Complemental strand, 15815660 - 15815286
Alignment:
| Q |
3 |
tatggataaacactgattctgcaacaggctcagtatctaaccacatagccataaacagaaacaaaacaaacagcaatgataatgatggtgatgttgtgta |
102 |
Q |
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| T |
15815660 |
tatggataaacactgattctgcaacaggctcagtatctaaccacatagccataaacagcaacaaaactaacagcaatgataatgatggtgatgttgtgta |
15815561 |
T |
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| Q |
103 |
tggattctacgattgtcgtggtgacataacaggaagtttctgtcagttttgtatcaacgctgctgttagagatatcgctcaacgttgtcccaatggcgtc |
202 |
Q |
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| T |
15815560 |
tggattctacgattgtcgtggtgacgtaacaggaagtttctgtcaattttgtatcaacgctgctgttagagcgatcgctcaatgttgtcccaatggcgtc |
15815461 |
T |
|
| Q |
203 |
tcggctatgatatggtatgacatatgcgtcatcggttattctgaccacaatacaacaggaaaaatttctgttaccccatcatggaatttaaccggaacca |
302 |
Q |
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| T |
15815460 |
tcggctatgatatggtatgacatatgtgtcatcggttattctgaccataatacatcaggaaaaatttctgttaccccatcatggaatttaaccggaacca |
15815361 |
T |
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| Q |
303 |
aaaatacgaaggactcaactgaacttgagaaagcagtagatgacatgaggaatttgataggaagagtgacggcag |
377 |
Q |
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| T |
15815360 |
aaaacacgaaggactcaactgaacttgagaaagcagtagatgacatgaggaatttgataggaagagtgacggcag |
15815286 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 101 - 336
Target Start/End: Complemental strand, 15802082 - 15801847
Alignment:
| Q |
101 |
tatggattctacgattgtcgtggtgacataacaggaagtttctgtcagttttgtatcaacgctgctgttagagatatcgctcaacgttgtcccaatggcg |
200 |
Q |
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| T |
15802082 |
tatgggttatacggttgtcgaggtgacatcacaggaagtttctgccgattctgtatcaacactgctgttagagaaatcgctcaacgttgtcctaacagtg |
15801983 |
T |
|
| Q |
201 |
tctcggctatgatatggtatgacatatgcgtcatcggttattctgaccacaatacaacaggaaaaatttctgttaccccatcatggaatttaaccggaac |
300 |
Q |
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| T |
15801982 |
tttcggctttgatatggtatgatgtatgcgtcatgggttacacaaaccagaatacgacaggaaaagttattgtaacaccatcatggaatataaccggatc |
15801883 |
T |
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| Q |
301 |
caaaaatacgaaggactcaactgaacttgagaaagc |
336 |
Q |
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| T |
15801882 |
cagaaacgttaaggactcaacagaacttgggaaagc |
15801847 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 101 - 240
Target Start/End: Complemental strand, 15794283 - 15794144
Alignment:
| Q |
101 |
tatggattctacgattgtcgtggtgacataacaggaagtttctgtcagttttgtatcaacgctgctgttagagatatcgctcaacgttgtcccaatggcg |
200 |
Q |
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| T |
15794283 |
tatgggttctatgattgtcggggtgacatcacaggaagtttctgtcaattttgtatcaacactgttgttagagatattgcaaaatattgtcccaacagtg |
15794184 |
T |
|
| Q |
201 |
tctcggctatgatatggtatgacatatgcgtcatcggtta |
240 |
Q |
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|||| ||||||||||||||||| ||||| |||| ||||| |
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| T |
15794183 |
tctcagctatgatatggtatgatttatgcatcatgggtta |
15794144 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 90 - 191
Target Start/End: Complemental strand, 15700338 - 15700237
Alignment:
| Q |
90 |
gtgatgttgtgtatggattctacgattgtcgtggtgacataacaggaagtttctgtcagttttgtatcaacgctgctgttagagatatcgctcaacgttg |
189 |
Q |
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|||||| ||| |||||| ||| |||||||| | |||| | ||||||||||||||||| |||||||||||| ||||||| | ||| || ||||||||||| |
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| T |
15700338 |
gtgatgatgtttatggaaactatgattgtcgggctgacgtcacaggaagtttctgtcaattttgtatcaacactgctgtcaaagaaattgctcaacgttg |
15700239 |
T |
|
| Q |
190 |
tc |
191 |
Q |
| |
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|| |
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|
| T |
15700238 |
tc |
15700237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 135 - 336
Target Start/End: Complemental strand, 15807667 - 15807466
Alignment:
| Q |
135 |
gaagtttctgtcagttttgtatcaacgctgctgttagagatatcgctcaacgttgtcccaatggcgtctcggctatgatatggtatgacatatgcgtcat |
234 |
Q |
| |
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||||||||||||| ||||| |||||| ||||| ||||||| || || || ||||||||| | ||||||||||| ||||||||||| ||||| |||| |
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| T |
15807667 |
gaagtttctgtcaattttgcatcaacactgcttttagagaaattgcaaaatattgtcccaacagtgtctcggctattatatggtatgatgtatgcatcat |
15807568 |
T |
|
| Q |
235 |
cggttattctgaccacaatacaacaggaaaaatttctgttaccccatcatggaatttaaccggaaccaaaaatacgaaggactcaactgaacttgagaaa |
334 |
Q |
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| T |
15807567 |
gggttatactaaccagaatccctcaggaagagtttttctagaaccatcatggaatgtaaccggatccaaaaacgttaaggactcaacagaacttgggaaa |
15807468 |
T |
|
| Q |
335 |
gc |
336 |
Q |
| |
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|| |
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|
| T |
15807467 |
gc |
15807466 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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