View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18452_low_10 (Length: 471)
Name: NF18452_low_10
Description: NF18452
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18452_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 350; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 5 - 435
Target Start/End: Original strand, 1215681 - 1216112
Alignment:
| Q |
5 |
gagatgaaacattaaaagaatgtaagcgaagaactgggagctccattcagtccaaaacagaacttgacagtagttctctcgctttggtgctttgggctgc |
104 |
Q |
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| T |
1215681 |
gagatgaaacattaaaataatgtaagcgaagaactgggagctccattcagtccaaaacagaacttgacagtagttctctcgctttggtgctttgggctgc |
1215780 |
T |
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| Q |
105 |
aaggaactcctatttttgctacttccataaatcacaaatctcaaatagctttgatgaattgaactagagtgcatgcaggttaataatacaatggactcgt |
204 |
Q |
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| T |
1215781 |
aaggaactcctatttttgctacttccataaatcacaaatctcaaatagctttgatgaattgaactagagtgcatgcaggttaataatacaatggactcgt |
1215880 |
T |
|
| Q |
205 |
ttatacaaacatcatccctttat-gttccaattttatctgatgtctctaaatggacttgtttccttattgttgattttcaaccatataccatnnnnnnnn |
303 |
Q |
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| T |
1215881 |
ttatacaaacatcatctctttatcgttccaattttatcggatgtctctaaatggactcgtttccttattgttgattttcaaccatataccataaaaaaca |
1215980 |
T |
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| Q |
304 |
nnnnnnnnnnttaattatcaaatgaaaatgaactgtaatcatttataactagagactagttaccgttacaacttagaaaaccactaaataagagtgctac |
403 |
Q |
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| T |
1215981 |
ataaaaaaaattaattatcaaatgaaaatgaactgtaatcatttataactagagacgagttaccgttacaacttagaaaaccactaaataagagtgctac |
1216080 |
T |
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| Q |
404 |
ctttttgacaatcttgaaattggttcatgact |
435 |
Q |
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| T |
1216081 |
ctttttgacaatcttgaaattggttcatgact |
1216112 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 85; Significance: 2e-40; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 8 - 176
Target Start/End: Original strand, 23229790 - 23229957
Alignment:
| Q |
8 |
atgaaacattaaaagaatgtaagcgaagaactgggagctccattcagtccaaaacagaacttgacagtagttctctcgctttggtgctttgggctgcaag |
107 |
Q |
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| T |
23229790 |
atgaaaaataaaaaggatgaaagcgaagaactgggagctcccttcagtccaaaacataatttgccagtagaattctcactt-ggcgctttgggctgcaag |
23229888 |
T |
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| Q |
108 |
gaactcctatttttgctacttccataaatcacaaatctcaaatagctttgatgaattgaactagagtgc |
176 |
Q |
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||||||| |||| ||| |||| |||| |||||||||||||||||||||||||||||||||| ||||||| |
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| T |
23229889 |
gaactcccatttctgcaactttcatatatcacaaatctcaaatagctttgatgaattgaacaagagtgc |
23229957 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 324 - 391
Target Start/End: Original strand, 23230068 - 23230130
Alignment:
| Q |
324 |
aatgaaaatgaactgtaatcatttataactagagactagttaccgttacaacttagaaaaccactaaa |
391 |
Q |
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| T |
23230068 |
aatgaaaatgaactatattcatttataactagag-----ttaccgttacagcttagaaaaccactaaa |
23230130 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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