View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18452_low_12 (Length: 365)
Name: NF18452_low_12
Description: NF18452
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18452_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 234; Significance: 1e-129; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 8022421 - 8022184
Alignment:
| Q |
1 |
tgttggaagcacaaaacatgcttctgctgaacatgttttggttggtttgttaaatgctagagatcatgtcaaccatgatgtccatcataggctatggaag |
100 |
Q |
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| T |
8022421 |
tgttggaagcacaaaacatgcttctgctgaacatgttttggttggtttgctaaatgctagagatcatgtcaaccatgatgtccatcataggctatggaag |
8022322 |
T |
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| Q |
101 |
cctgttttacaaagtattcctgagcttaattaattaggttcaaaattggtggtggtggggtgtgtatagtagaagttggttgagaaaagtttaggaagtt |
200 |
Q |
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| T |
8022321 |
cctgttttacaaagtattcctgagcttaattaattaggttcaaaattggtggtggtggggtgtgtatagtagaagttggttgagaaaagtttaggaagtt |
8022222 |
T |
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| Q |
201 |
tgtacttgtacaaaatcagaactaagctatactcaaca |
238 |
Q |
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| T |
8022221 |
tgtacttgtacaaaatcagaactaagctatactcaaca |
8022184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 292 - 346
Target Start/End: Complemental strand, 8022131 - 8022077
Alignment:
| Q |
292 |
gtaagatatatatagaggttgagaatgtgttatttctatatttttatgattgtat |
346 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8022131 |
gtaagatatatatagaggttgagaatgtgttatttctatatttttatgattgtat |
8022077 |
T |
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