View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18452_low_16 (Length: 288)
Name: NF18452_low_16
Description: NF18452
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18452_low_16 |
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Alignment Details
Target: chr3 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 269
Target Start/End: Original strand, 31568458 - 31568726
Alignment:
| Q |
1 |
aagagagaagaaccttagaaggggaagcagcgagaacggaagtaggatcaggatcaccaaggcgaagagaaagacgatggaggtggttgtttttggagtc |
100 |
Q |
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| T |
31568458 |
aagagagaagaaccttagaaggggaagcagcgagaacggaagtaggatcaggatcaccaaggcgaagagaaagacgatggaggtggttgtttttggagtc |
31568557 |
T |
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| Q |
101 |
ccagaaatagagacggttggcaccgtcgtaagcgagtaggtttcgtgaaacggagttatcggaggcnnnnnnnnnnnnnnnnnnnnnagtgaagagaggg |
200 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||| |
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| T |
31568558 |
ccataaatagagacggttggcaccgtcgtaagcgagtaggtttcgtgaaacggagttaccggaggcggtgtgtgtggtggtggtggtagtgaagagaggg |
31568657 |
T |
|
| Q |
201 |
tgttttggtaattgatgccattcgagttcttctttaggagttgttgaacttggagagtagcttggttct |
269 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31568658 |
tgttttggtaattgatgccattcgagttcttctttaggagttgttgaacttggagagtagcttggttct |
31568726 |
T |
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