View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18452_low_20 (Length: 235)
Name: NF18452_low_20
Description: NF18452
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18452_low_20 |
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| [»] scaffold1067 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 10 - 210
Target Start/End: Complemental strand, 34373529 - 34373329
Alignment:
| Q |
10 |
catcatcacaatttcagcattgggcgggcgtgtttaggaagatacttttaataaaaccttatttcaacaactaatttgaaaacaacactaaagcaaagtc |
109 |
Q |
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| T |
34373529 |
catcaccacaatttcagcattgggcgggcgtgtttaggaagatacttttcataaaaccttatttcaacaactaatttgaaaacaacactaaagcaaagtc |
34373430 |
T |
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| Q |
110 |
aaaaatcaatgcaccagatatttaatacataaatgtatgaaatatactgcaggttagatattgctccacattttgcaagtaattgaataagcatagtcaa |
209 |
Q |
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| T |
34373429 |
aaaaatcaatgcactagatatttaatacataaatgtatgaaatatactgcaggttagatattgctccacattttgcaagtaattgaataagcatagtcaa |
34373330 |
T |
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| Q |
210 |
a |
210 |
Q |
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| T |
34373329 |
a |
34373329 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 64 - 203
Target Start/End: Complemental strand, 34378000 - 34377862
Alignment:
| Q |
64 |
aaccttatttcaacaactaatttgaaaacaacactaaagcaaagtcaaaaatcaatgcaccagatatttaatacataaatgtatgaaatatactgcaggt |
163 |
Q |
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||||||||||||| |||||||||||||| || |||| |||| | ||||| |||||||||||||| ||||||||||||||||||| ||| | || ||||| |
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| T |
34378000 |
aaccttatttcaataactaatttgaaaa-aatactacagcatacccaaaattcaatgcaccagatgtttaatacataaatgtatggaatgtgctacaggt |
34377902 |
T |
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| Q |
164 |
tagatattgctccacattttgcaagtaattgaataagcat |
203 |
Q |
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| T |
34377901 |
tagatattgctccacattttgcaagtaattaaataagcat |
34377862 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 104; Significance: 5e-52; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 10 - 210
Target Start/End: Complemental strand, 15741779 - 15741585
Alignment:
| Q |
10 |
catcatcacaatttcagcattgggcgggcgtgtttaggaagatacttttaataaaaccttatttcaacaactaatttgaaaacaacactaaagcaaagtc |
109 |
Q |
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| T |
15741779 |
catcaccagaatttcagcatt----gggtgtgtttaggaagatacttttcat-aaaccttatttcaataactaatttcaaaa-aacactaaagcaaagtc |
15741686 |
T |
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| Q |
110 |
aaaaatcaatgcaccagatatttaatacataaatgtatgaaatatactgcaggttagatattgctccacattttgcaagtaattgaataagcatagtcaa |
209 |
Q |
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| T |
15741685 |
aaaattcaatgcgtcggatatttaatacataaatgtatggaatgtgttacaggttagatattgctccacaatttgcaagtaattgaataagcatagtcaa |
15741586 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 104; Significance: 5e-52; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 39 - 210
Target Start/End: Original strand, 1574622 - 1574791
Alignment:
| Q |
39 |
gtgtttaggaagatacttttaataaaaccttatttcaacaactaatttgaaaacaacactaaagcaaagtcaaaaatcaatgcaccagatatttaataca |
138 |
Q |
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| T |
1574622 |
gtgtttaggaagatacttttcataaa-ccttatttcaataactaatttcaaaa-aacactaaagcaaagtcaaaattcaatgcgtcggatatttaataca |
1574719 |
T |
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| Q |
139 |
taaatgtatgaaatatactgcaggttagatattgctccacattttgcaagtaattgaataagcatagtcaaa |
210 |
Q |
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| T |
1574720 |
taaatgtatggaatgtgttacaggttagatattgctccacaatttgcaagtaattgaataagcatagtcaaa |
1574791 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 100; Significance: 1e-49; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 39 - 210
Target Start/End: Original strand, 10532622 - 10532791
Alignment:
| Q |
39 |
gtgtttaggaagatacttttaataaaaccttatttcaacaactaatttgaaaacaacactaaagcaaagtcaaaaatcaatgcaccagatatttaataca |
138 |
Q |
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| T |
10532622 |
gtgtttaggaagatacttttcataaatc-ttatttcaataattaatttgaaaa-aacactaaagcaaagtcaaaattcaatgcgccggatatttaataca |
10532719 |
T |
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| Q |
139 |
taaatgtatgaaatatactgcaggttagatattgctccacattttgcaagtaattgaataagcatagtcaaa |
210 |
Q |
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| T |
10532720 |
taaatgtattgaatgtacgacaggttagatattgctccacaatttgcaagtaactgaataagcatagtcaaa |
10532791 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 83 - 210
Target Start/End: Original strand, 10525842 - 10525968
Alignment:
| Q |
83 |
atttgaaaacaacactaaagcaaagtcaaaaatcaatgcaccagatatttaatacataaatgtatgaaatatactgcaggttagatattgctccacattt |
182 |
Q |
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||||||||| ||||||||||||||||||||| ||||||||| |||||||||||||| |||||| || ||| |||| ||||||||||||||||||| |||| |
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| T |
10525842 |
atttgaaaa-aacactaaagcaaagtcaaaattcaatgcactagatatttaatacaaaaatgtgtggaatgtactacaggttagatattgctccaaattt |
10525940 |
T |
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| Q |
183 |
tgcaagtaattgaataagcatagtcaaa |
210 |
Q |
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| T |
10525941 |
tgcaagtaactgaataagcatagtcaaa |
10525968 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1067 (Bit Score: 98; Significance: 2e-48; HSPs: 1)
Name: scaffold1067
Description:
Target: scaffold1067; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 43 - 208
Target Start/End: Original strand, 2378 - 2541
Alignment:
| Q |
43 |
ttaggaagatacttttaataaaaccttatttcaacaactaatttgaaaacaacactaaagcaaagtcaaaaatcaatgcaccagatatttaatacataaa |
142 |
Q |
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||||||| |||||||| ||||| ||||||||||| ||||||||| |||| ||||||||||||||||||||| ||||||| || |||||| |||||||||| |
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| T |
2378 |
ttaggaaaatacttttcataaa-ccttatttcaataactaatttcaaaa-aacactaaagcaaagtcaaaattcaatgcgccggatattcaatacataaa |
2475 |
T |
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| Q |
143 |
tgtatgaaatatactgcaggttagatattgctccacattttgcaagtaattgaataagcatagtca |
208 |
Q |
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| T |
2476 |
tgtatggaatgtattacaggttagatattgctccacaatttgcaagtaattgaataagcatagtca |
2541 |
T |
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