View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18452_low_3 (Length: 668)

Name: NF18452_low_3
Description: NF18452
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18452_low_3
NF18452_low_3
[»] chr3 (9 HSPs)
chr3 (1-655)||(30667016-30667664)
chr3 (442-581)||(43116477-43116616)
chr3 (515-604)||(22232781-22232870)
chr3 (528-612)||(25453877-25453961)
chr3 (512-580)||(28306110-28306178)
chr3 (528-580)||(31337451-31337503)
chr3 (560-611)||(44747427-44747478)
chr3 (528-580)||(1816551-1816603)
chr3 (560-612)||(42808972-42809024)
[»] chr5 (14 HSPs)
chr5 (512-604)||(36639474-36639566)
chr5 (517-597)||(12975304-12975384)
chr5 (517-604)||(31694475-31694562)
chr5 (442-496)||(6725119-6725173)
chr5 (530-611)||(41016149-41016230)
chr5 (560-612)||(11707055-11707107)
chr5 (517-580)||(14295463-14295526)
chr5 (517-572)||(28586824-28586879)
chr5 (518-580)||(16889693-16889755)
chr5 (528-577)||(32059642-32059691)
chr5 (530-578)||(3977278-3977326)
chr5 (528-580)||(18857450-18857502)
chr5 (442-542)||(20982223-20982323)
chr5 (528-580)||(41277400-41277452)
[»] chr1 (7 HSPs)
chr1 (528-580)||(4548689-4548741)
chr1 (515-577)||(40304107-40304169)
chr1 (517-610)||(4576762-4576855)
chr1 (560-612)||(7137016-7137068)
chr1 (517-577)||(7273992-7274052)
chr1 (560-612)||(7472311-7472363)
chr1 (560-612)||(34290236-34290288)
[»] chr7 (10 HSPs)
chr7 (442-580)||(28340446-28340584)
chr7 (457-580)||(47003984-47004107)
chr7 (528-612)||(12110328-12110412)
chr7 (442-497)||(2012765-2012820)
chr7 (517-604)||(17989049-17989136)
chr7 (442-480)||(504114-504152)
chr7 (528-577)||(31338476-31338525)
chr7 (531-580)||(44821930-44821979)
chr7 (560-612)||(18749835-18749887)
chr7 (528-604)||(30456476-30456552)
[»] chr6 (8 HSPs)
chr6 (517-612)||(4006671-4006766)
chr6 (469-550)||(31672548-31672629)
chr6 (517-580)||(2027456-2027519)
chr6 (444-497)||(5730589-5730642)
chr6 (442-491)||(30004784-30004833)
chr6 (469-577)||(7354113-7354221)
chr6 (528-612)||(10154189-10154273)
chr6 (528-612)||(27894015-27894098)
[»] chr4 (10 HSPs)
chr4 (530-612)||(18628561-18628643)
chr4 (517-579)||(53626733-53626795)
chr4 (528-613)||(2996541-2996626)
chr4 (515-580)||(49085944-49086009)
chr4 (560-612)||(47800623-47800675)
chr4 (517-580)||(30207621-30207683)
chr4 (561-612)||(52746858-52746909)
chr4 (528-580)||(19429538-19429590)
chr4 (469-565)||(46013365-46013461)
chr4 (469-565)||(46247127-46247223)
[»] chr8 (10 HSPs)
chr8 (560-612)||(27028831-27028883)
chr8 (468-547)||(39392744-39392823)
chr8 (539-577)||(32143098-32143136)
chr8 (559-612)||(5069696-5069749)
chr8 (515-604)||(37822684-37822773)
chr8 (528-612)||(5070985-5071069)
chr8 (528-580)||(6509353-6509405)
chr8 (528-612)||(33714254-33714337)
chr8 (560-612)||(37353267-37353319)
chr8 (517-577)||(40728471-40728531)
[»] chr2 (8 HSPs)
chr2 (528-604)||(36863651-36863727)
chr2 (518-604)||(14666506-14666592)
chr2 (519-584)||(40145421-40145486)
chr2 (559-612)||(43985021-43985074)
chr2 (560-612)||(9174815-9174867)
chr2 (528-604)||(9556207-9556283)
chr2 (560-612)||(36852472-36852524)
chr2 (450-498)||(43808466-43808514)


Alignment Details
Target: chr3 (Bit Score: 543; Significance: 0; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 543; E-Value: 0
Query Start/End: Original strand, 1 - 655
Target Start/End: Original strand, 30667016 - 30667664
Alignment:
Q  1 cataggccaaacccctccatctgtctccgtcggtctgtttaccctcatcgatctctttagcaaaaactttgaagcttcctgaggaaacttttgtgtttgg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30667016 cataggccaaacccctccatctgtctccgtcggtctgtttaccctcatcgatctctttagcaaaaactttgaagcttcctgaggaaacttttgtgtttgg 30667115  T
Q  101 aagtcttgcggtaagcttcttcaagcttgtgccgaagaaagctgaattagaaactgttggtccagctactactgagccattcaagctcatctgcaacatc 200  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30667116 aagtcttgcggtaagctttttcaagcttgtgccgaagaaagctgaattagaaactgttggtccagctactactgagccattcaagctcatctgcaacatc 30667215  T
Q  201 gcaacacttcacattatcaagagttcaattcttacaaattacaatttacctccgcctctttttacttatctattgtacatca-nnnnnnngataattagg 299  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||||     
T  30667216 gcaacacttcacattattaagagttcaattcttacaaattacaatttacctccgcctctttttacttatctattgtacatcattttttttgataattagt 30667315  T
Q  300 cgaaaaaatctattggatcatgatagaacttgtatcgattcaaaaatcttagatacaagttctgtcgtgatcgactagac-----ccttgaaatctatta 394  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     |||||||||||||||    
T  30667316 caaaaaaatctattggatcatgatagaacttgtatcgattcaaaaatcttagatacaagttctgtcgtgatcgactagaccaactccttgaaatctatta 30667415  T
Q  395 ctcctatatatcttttttagctttacatgatttctatattcggatccgtttggataaatagtttaattgagtgtttatagcataagtgattatcatacaa 494  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30667416 ctcctatatatcttttttagctttacatgatttctatattcggatccgtttggataaatagtttaattgagtgtttatagcataagtgattatcatacaa 30667515  T
Q  495 gtgtaaatgtgtaaaccatctatataacaaagaataaaataaattcaaactgtttttatacaacttataagctgttttcataagctttctcgtaaagctt 594  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||            ||||||||    
T  30667516 gtgtaaatgtgtaaaccatctatataacaaagaataaaataaattcaaactgtttttatacaacttattatctgttttca------------taaagctt 30667603  T
Q  595 atgaaaataatctgaaaaacatctacgaatatgtcttaaactactataaactctcacaggt 655  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30667604 atgaaaacaatctgaaaaacatctacgaatatgtcttaaactactataaactctcacaggt 30667664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 442 - 581
Target Start/End: Complemental strand, 43116616 - 43116477
Alignment:
Q  442 gtttggataaatagtttaattgagtgtttatagcataagtgattatcatacaagtgtaaatgtgtaaaccatctatataacaaagaataaaataaattca 541  Q
    ||||||||||| |  |||||| |||||||||||||||| || |||||||||||||||  |||||||| | || | |||||||||  ||||||| || |||    
T  43116616 gtttggataaacaacttaatttagtgtttatagcataaatgtttatcatacaagtgtttatgtgtaagctatttctataacaaaagataaaatcaaatca 43116517  T
Q  542 aactgtttttatacaacttataagctgttttcataagctt 581  Q
    |||  |||| ||| ||  ||||||  ||||||||||||||    
T  43116516 aacaattttcatataagctataagtcgttttcataagctt 43116477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 515 - 604
Target Start/End: Original strand, 22232781 - 22232870
Alignment:
Q  515 tatataacaaagaataaaataaattcaaactgtttttatacaacttataagctgttttcataagctttctcgtaaagcttatgaaaataa 604  Q
    |||||||||||  |||||||||| |||||||||||| ||| || |  |||||| |||||||||||| ||  |||  ||||||||||||||    
T  22232781 tatataacaaatgataaaataaagtcaaactgttttcatataagtcgtaagctattttcataagctatcatgtagggcttatgaaaataa 22232870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 528 - 612
Target Start/End: Complemental strand, 25453961 - 25453877
Alignment:
Q  528 ataaaataaattcaaactgtttttatacaacttataagctgttttcataagctttctcgtaaagcttatgaaaataatctgaaaa 612  Q
    |||||||||| ||||||||||||  || ||| ||||| || ||||||||| || ||  | ||||||||||||||||| |||||||    
T  25453961 ataaaataaagtcaaactgttttcgtataacctataacctattttcataaactatcctggaaagcttatgaaaataagctgaaaa 25453877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 512 - 580
Target Start/End: Original strand, 28306110 - 28306178
Alignment:
Q  512 atctatataacaaagaataaaataaattcaaactgtttttatacaacttataagctgttttcataagct 580  Q
    |||| ||||||||| | ||||||||| |||||||||||| ||| || ||| ||| ||||||||||||||    
T  28306110 atctctataacaaaaagtaaaataaagtcaaactgttttcatataagttacaagttgttttcataagct 28306178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 528 - 580
Target Start/End: Complemental strand, 31337503 - 31337451
Alignment:
Q  528 ataaaataaattcaaactgtttttatacaacttataagctgttttcataagct 580  Q
    |||||||||| |||||||||||||||| || ||||||| ||| ||||||||||    
T  31337503 ataaaataaagtcaaactgtttttatataagttataagttgtattcataagct 31337451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 560 - 611
Target Start/End: Complemental strand, 44747478 - 44747427
Alignment:
Q  560 tataagctgttttcataagctttctcgtaaagcttatgaaaataatctgaaa 611  Q
    ||||||||||||||||||||| ||| | ||| ||||||||||||| ||||||    
T  44747478 tataagctgttttcataagctatcttggaaaacttatgaaaataagctgaaa 44747427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 528 - 580
Target Start/End: Original strand, 1816551 - 1816603
Alignment:
Q  528 ataaaataaattcaaactgtttttatacaacttataagctgttttcataagct 580  Q
    |||||||||| ||||||||||||| || ||  |||||| ||||||||||||||    
T  1816551 ataaaataaagtcaaactgtttttgtataagatataagttgttttcataagct 1816603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 560 - 612
Target Start/End: Original strand, 42808972 - 42809024
Alignment:
Q  560 tataagctgttttcataagctttctcgtaaagcttatgaaaataatctgaaaa 612  Q
    ||||||||||||||||||||| ||||| | ||||| | ||||||| |||||||    
T  42808972 tataagctgttttcataagctctctcggagagcttgtcaaaataagctgaaaa 42809024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 512 - 604
Target Start/End: Original strand, 36639474 - 36639566
Alignment:
Q  512 atctatataacaaagaataaaataaattcaaactgtttttatacaacttataagctgttttcataagctttctcgtaaagcttatgaaaataa 604  Q
    |||| |||||||||  |||||||||| ||||| |||||| |||||| |||||  ||||||||||||||| ||| | | |||||||||||||||    
T  36639474 atctttataacaaaagataaaataaaatcaaaatgttttcatacaagttatagactgttttcataagctatcttgaagagcttatgaaaataa 36639566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 517 - 597
Target Start/End: Original strand, 12975304 - 12975384
Alignment:
Q  517 tataacaaagaataaaataaattcaaactgtttttatacaacttataagctgttttcataagctttctcgtaaagcttatg 597  Q
    ||||||||||||||||||||| ||||| |||||| ||| ||  |||||||||| |||||||||| ||| | | ||||||||    
T  12975304 tataacaaagaataaaataaaatcaaattgttttcatataagctataagctgtgttcataagctatcttggagagcttatg 12975384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 517 - 604
Target Start/End: Original strand, 31694475 - 31694562
Alignment:
Q  517 tataacaaagaataaaataaattcaaactgtttttatacaacttataagctgttttcataagctttctcgtaaagcttatgaaaataa 604  Q
    |||||||||  ||||| |||| |||||||||||||||||||  |||||| |||| || ||||||  || ||| |||||||||||||||    
T  31694475 tataacaaaacataaactaaagtcaaactgtttttatacaaactataagttgttctcttaagctcacttgtagagcttatgaaaataa 31694562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 442 - 496
Target Start/End: Original strand, 6725119 - 6725173
Alignment:
Q  442 gtttggataaatagtttaattgagtgtttatagcataagtgattatcatacaagt 496  Q
    ||||||||||||| ||||||| |||| |||||||||||||| |||||||| ||||    
T  6725119 gtttggataaataatttaattaagtgcttatagcataagtgcttatcatataagt 6725173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 530 - 611
Target Start/End: Original strand, 41016149 - 41016230
Alignment:
Q  530 aaaataaattcaaactgtttttatacaacttataagctgttttcataagctttctcgtaaagcttatgaaaataatctgaaa 611  Q
    ||||||||||||||||||||| ||| ||  |||||| |||||||| ||||  ||  | ||||||||||||||||| ||||||    
T  41016149 aaaataaattcaaactgttttcatataagctataagttgttttcacaagccatcatggaaagcttatgaaaataagctgaaa 41016230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 560 - 612
Target Start/End: Original strand, 11707055 - 11707107
Alignment:
Q  560 tataagctgttttcataagctttctcgtaaagcttatgaaaataatctgaaaa 612  Q
    ||||||||||||||||||||| ||| ||| ||||| ||||||||| |||||||    
T  11707055 tataagctgttttcataagctatcttgtagagcttttgaaaataagctgaaaa 11707107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 517 - 580
Target Start/End: Original strand, 14295463 - 14295526
Alignment:
Q  517 tataacaaagaataaaataaattcaaactgtttttatacaacttataagctgttttcataagct 580  Q
    |||||||||  |||||||||| |||||||||||| ||| ||  |||||||||||||| ||||||    
T  14295463 tataacaaaagataaaataaagtcaaactgttttcatataagctataagctgttttcgtaagct 14295526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 517 - 572
Target Start/End: Complemental strand, 28586879 - 28586824
Alignment:
Q  517 tataacaaagaataaaataaattcaaactgtttttatacaacttataagctgtttt 572  Q
    |||||||||  |||||||||| |||||||||||| ||| || ||||||||||||||    
T  28586879 tataacaaaagataaaataaagtcaaactgttttcatataaattataagctgtttt 28586824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 518 - 580
Target Start/End: Original strand, 16889693 - 16889755
Alignment:
Q  518 ataacaaagaataaaataaattcaaactgtttttatacaacttataagctgttttcataagct 580  Q
    ||||||||  ||||| | || |||||||||||||||| ||  |||||||||||||||||||||    
T  16889693 ataacaaaagataaacttaagtcaaactgtttttatagaagctataagctgttttcataagct 16889755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 528 - 577
Target Start/End: Complemental strand, 32059691 - 32059642
Alignment:
Q  528 ataaaataaattcaaactgtttttatacaacttataagctgttttcataa 577  Q
    |||||||||| |||||||||||| ||| ||  ||||||||||||||||||    
T  32059691 ataaaataaagtcaaactgttttcatataagctataagctgttttcataa 32059642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 530 - 578
Target Start/End: Original strand, 3977278 - 3977326
Alignment:
Q  530 aaaataaattcaaactgtttttatacaacttataagctgttttcataag 578  Q
    |||||||| ||||||||||||| || |||  ||||||||||||||||||    
T  3977278 aaaataaaatcaaactgtttttgtataacccataagctgttttcataag 3977326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 528 - 580
Target Start/End: Complemental strand, 18857502 - 18857450
Alignment:
Q  528 ataaaataaattcaaactgtttttatacaacttataagctgttttcataagct 580  Q
    |||||||||| ||||| ||||||| || ||  |||||||||||||||||||||    
T  18857502 ataaaataaagtcaaattgtttttctataatctataagctgttttcataagct 18857450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 442 - 542
Target Start/End: Complemental strand, 20982323 - 20982223
Alignment:
Q  442 gtttggataaatagtttaattgagtgtttatagcataagtgattatcatacaagtgtaaatgtgtaaaccatctatataacaaagaataaaataaattca 541  Q
    ||||||||||| |  || ||| |||| |||||||||||||| |||||||| |||||   |||| ||| | || | |||||||||| |||||||||| |||    
T  20982323 gtttggataaacaacttcattaagtgcttatagcataagtgcttatcatataagtgcttatgtataagctatttctataacaaaggataaaataaagtca 20982224  T
Q  542 a 542  Q
    |    
T  20982223 a 20982223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 528 - 580
Target Start/End: Complemental strand, 41277452 - 41277400
Alignment:
Q  528 ataaaataaattcaaactgtttttatacaacttataagctgttttcataagct 580  Q
    |||||||||| |||||||||||| ||| || ||| ||| ||||||||||||||    
T  41277452 ataaaataaagtcaaactgttttcatataagttaaaagttgttttcataagct 41277400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 528 - 580
Target Start/End: Original strand, 4548689 - 4548741
Alignment:
Q  528 ataaaataaattcaaactgtttttatacaacttataagctgttttcataagct 580  Q
    |||||||||| ||||||||||||||||||| | ||||||||||||||||||||    
T  4548689 ataaaataaagtcaaactgtttttatacaagtcataagctgttttcataagct 4548741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 515 - 577
Target Start/End: Complemental strand, 40304169 - 40304107
Alignment:
Q  515 tatataacaaagaataaaataaattcaaactgtttttatacaacttataagctgttttcataa 577  Q
    |||||||||||  |||||||||| ||| | |||||| ||| || |||||||||||||||||||    
T  40304169 tatataacaaaagataaaataaaatcacattgttttcatataagttataagctgttttcataa 40304107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 517 - 610
Target Start/End: Original strand, 4576762 - 4576855
Alignment:
Q  517 tataacaaagaataaaataaattcaaactgtttttatacaacttataagctgttttcataagctttctcgtaaagcttatgaaaataatctgaa 610  Q
    |||||||||  || ||||||| | ||| | ||||| ||||| |||||||||||||||||||||| | | | | | ||||||||||||| |||||    
T  4576762 tataacaaaagattaaataaagttaaaatatttttgtacaagttataagctgttttcataagctatattgaataacttatgaaaataagctgaa 4576855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 560 - 612
Target Start/End: Complemental strand, 7137068 - 7137016
Alignment:
Q  560 tataagctgttttcataagctttctcgtaaagcttatgaaaataatctgaaaa 612  Q
    ||||||||||||||||||||| ||| | | | ||||||||||||| |||||||    
T  7137068 tataagctgttttcataagctatcttggagaacttatgaaaataagctgaaaa 7137016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 517 - 577
Target Start/End: Complemental strand, 7274052 - 7273992
Alignment:
Q  517 tataacaaagaataaaataaattcaaactgtttttatacaacttataagctgttttcataa 577  Q
    |||||||||  || ||||||| ||||| |||||| |||||| ||||||||||||| |||||    
T  7274052 tataacaaaagatgaaataaagtcaaattgttttcatacaagttataagctgtttccataa 7273992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 560 - 612
Target Start/End: Original strand, 7472311 - 7472363
Alignment:
Q  560 tataagctgttttcataagctttctcgtaaagcttatgaaaataatctgaaaa 612  Q
    |||||||||||| |||||||| ||| | | ||||||||||||||| |||||||    
T  7472311 tataagctgtttccataagctatcttggagagcttatgaaaataagctgaaaa 7472363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 560 - 612
Target Start/End: Original strand, 34290236 - 34290288
Alignment:
Q  560 tataagctgttttcataagctttctcgtaaagcttatgaaaataatctgaaaa 612  Q
    ||||||||||||||||||||| ||| | | | ||||||||||||| |||||||    
T  34290236 tataagctgttttcataagctatcttgaagaacttatgaaaataagctgaaaa 34290288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.000000000001; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 442 - 580
Target Start/End: Complemental strand, 28340584 - 28340446
Alignment:
Q  442 gtttggataaatagtttaattgagtgtttatagcataagtgattatcatacaagtgtaaatgtgtaaaccatctatataacaaagaataaaataaattca 541  Q
    ||||||||| | || |||||| |||| ||||||||| |||| ||||| ||||||| | ||||| ||| | || | |  |||||| ||||||||||| |||    
T  28340584 gtttggatatacagcttaattaagtgcttatagcattagtgtttatcgtacaagtattaatgtataagctatttcttcaacaaacaataaaataaagtca 28340485  T
Q  542 aactgtttttatacaacttataagctgttttcataagct 580  Q
    ||||||||| ||  || ||||||| |||||||| |||||    
T  28340484 aactgttttcatgtaagttataagttgttttcagaagct 28340446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 457 - 580
Target Start/End: Original strand, 47003984 - 47004107
Alignment:
Q  457 ttaattgagtgtttatagcataagtgattatcatacaagtgtaaatgtgtaaaccatctatataacaaagaataaaataaattcaaactgtttttataca 556  Q
    |||||| |||| |||||||| || || |||||||| ||||||  || ||||| | || | ||||||||   |||||||||| ||||||| ||||||||      
T  47003984 ttaattaagtgcttatagcaaaaatgtttatcatataagtgtttatatgtaagctatttctataacaatagataaaataaagtcaaactatttttatatg 47004083  T
Q  557 acttataagctgttttcataagct 580  Q
    |  |||||||||||||||||||||    
T  47004084 aactataagctgttttcataagct 47004107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 528 - 612
Target Start/End: Original strand, 12110328 - 12110412
Alignment:
Q  528 ataaaataaattcaaactgtttttatacaacttataagctgttttcataagctttctcgtaaagcttatgaaaataatctgaaaa 612  Q
    |||||||||| ||||| ||||||  || ||  ||||||||||||||||||||| ||| | | | |||||||||||||||| ||||    
T  12110328 ataaaataaagtcaaattgttttggtataagctataagctgttttcataagctatcttgaagaacttatgaaaataatctaaaaa 12110412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 442 - 497
Target Start/End: Complemental strand, 2012820 - 2012765
Alignment:
Q  442 gtttggataaatagtttaattgagtgtttatagcataagtgattatcatacaagtg 497  Q
    ||||||||||| || |||||| |||| |||||||||| ||| ||||||||||||||    
T  2012820 gtttggataaaaagcttaattaagtgcttatagcataggtgcttatcatacaagtg 2012765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 517 - 604
Target Start/End: Complemental strand, 17989136 - 17989049
Alignment:
Q  517 tataacaaagaataaaataaattcaaactgtttttatacaacttataagctgttttcataagctttctcgtaaagcttatgaaaataa 604  Q
    |||||||||  |||||||||| |||||||||||| ||| ||  |||||  |||||||||||||| ||  | | |||||||||||||||    
T  17989136 tataacaaaatataaaataaagtcaaactgttttcatataaactataatttgttttcataagctctcctgaagagcttatgaaaataa 17989049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 442 - 480
Target Start/End: Original strand, 504114 - 504152
Alignment:
Q  442 gtttggataaatagtttaattgagtgtttatagcataag 480  Q
    ||||||||||||||||||||| |||| ||||||||||||    
T  504114 gtttggataaatagtttaattaagtgcttatagcataag 504152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 528 - 577
Target Start/End: Original strand, 31338476 - 31338525
Alignment:
Q  528 ataaaataaattcaaactgtttttatacaacttataagctgttttcataa 577  Q
    |||||||||| |||||||||||||||| || ||||||| ||||| |||||    
T  31338476 ataaaataaagtcaaactgtttttatataagttataagttgtttccataa 31338525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 531 - 580
Target Start/End: Original strand, 44821930 - 44821979
Alignment:
Q  531 aaataaattcaaactgtttttatacaacttataagctgttttcataagct 580  Q
    ||||||| ||||| ||||||| || || ||||||||||||||||||||||    
T  44821930 aaataaagtcaaattgtttttgtataagttataagctgttttcataagct 44821979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 560 - 612
Target Start/End: Complemental strand, 18749887 - 18749835
Alignment:
Q  560 tataagctgttttcataagctttctcgtaaagcttatgaaaataatctgaaaa 612  Q
    ||||||||||||||||||||| || || ||| |||||| |||||| |||||||    
T  18749887 tataagctgttttcataagctatcacggaaaacttatggaaataagctgaaaa 18749835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 528 - 604
Target Start/End: Complemental strand, 30456552 - 30456476
Alignment:
Q  528 ataaaataaattcaaactgtttttatacaacttataagctgttttcataagctttctcgtaaagcttatgaaaataa 604  Q
    |||||||||| ||||| |||||| ||| || |||||||  |||||||||| || ||| | | |||||||||||||||    
T  30456552 ataaaataaagtcaaattgttttcatataagttataagtggttttcataaactatcttggagagcttatgaaaataa 30456476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000006; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 517 - 612
Target Start/End: Original strand, 4006671 - 4006766
Alignment:
Q  517 tataacaaagaataaaataaattcaaactgtttttatacaacttataagctgttttcataagctttctcgtaaagcttatgaaaataatctgaaaa 612  Q
    |||||||||  |||||||||| ||||| |||||||||| ||  |||||| |||||||||||||| || |  | || |||||||||||| |||||||    
T  4006671 tataacaaatgataaaataaagtcaaattgtttttatataagctataagttgttttcataagctatccctgagaggttatgaaaataagctgaaaa 4006766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 469 - 550
Target Start/End: Complemental strand, 31672629 - 31672548
Alignment:
Q  469 ttatagcataagtgattatcatacaagtgtaaatgtgtaaaccatctatataacaaagaataaaataaattcaaactgtttt 550  Q
    ||||||| |||| |||||||||||||||||  |||| ||||| || |  || ||||| ||||||||||| ||||||||||||    
T  31672629 ttatagcttaagcgattatcatacaagtgtttatgtataaactatttccatgacaaaaaataaaataaagtcaaactgtttt 31672548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 517 - 580
Target Start/End: Complemental strand, 2027519 - 2027456
Alignment:
Q  517 tataacaaagaataaaataaattcaaactgtttttatacaacttataagctgttttcataagct 580  Q
    |||||||||  |||||||||| ||||||| |||| ||| ||| ||||||||||| |||||||||    
T  2027519 tataacaaaagataaaataaagtcaaactattttcatataacctataagctgttctcataagct 2027456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 444 - 497
Target Start/End: Original strand, 5730589 - 5730642
Alignment:
Q  444 ttggataaatagtttaattgagtgtttatagcataagtgattatcatacaagtg 497  Q
    ||||||||||||||||||| || | |||||||| || || ||||||||||||||    
T  5730589 ttggataaatagtttaattaagcgcttatagcaaaaatgtttatcatacaagtg 5730642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 442 - 491
Target Start/End: Original strand, 30004784 - 30004833
Alignment:
Q  442 gtttggataaatagtttaattgagtgtttatagcataagtgattatcata 491  Q
    ||||||||||| | |||||||||||| ||||||||||||  |||||||||    
T  30004784 gtttggataaacaatttaattgagtgcttatagcataagaaattatcata 30004833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 469 - 577
Target Start/End: Original strand, 7354113 - 7354221
Alignment:
Q  469 ttatagcataagtgattatcatacaagtgtaaatgtgtaaaccatctatataacaaagaataaaataaattcaaactgtttttatacaacttataagctg 568  Q
    ||||||||||| || || |||||||||| |  |||| ||||| || | |||||||||  |||||||||| || |||| |||| ||| ||  || ||||||    
T  7354113 ttatagcataaatgcttttcatacaagttttcatgtataaactatttctataacaaaagataaaataaaatcgaactattttcatataagatacaagctg 7354212  T
Q  569 ttttcataa 577  Q
    |||||||||    
T  7354213 ttttcataa 7354221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 528 - 612
Target Start/End: Original strand, 10154189 - 10154273
Alignment:
Q  528 ataaaataaattcaaactgtttttatacaacttataagctgttttcataagctttctcgtaaagcttatgaaaataatctgaaaa 612  Q
    |||||||||| |||||||||||| ||| || |||||||||  ||||||| |||  |  | |||||||||| |||||| |||||||    
T  10154189 ataaaataaagtcaaactgttttcatataagttataagctactttcataggctagcatgaaaagcttatggaaataaactgaaaa 10154273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 528 - 612
Target Start/End: Original strand, 27894015 - 27894098
Alignment:
Q  528 ataaaataaattcaaactgtttttatacaacttataagctgttttcataagctttctcgtaaagcttatgaaaataatctgaaaa 612  Q
    |||||||||| ||||| |||||| ||| ||  ||| || |||||||||||| | ||| | ||||||||||||||||| |||||||    
T  27894015 ataaaataaagtcaaattgttttaatataaactattag-tgttttcataagatatcttgaaaagcttatgaaaataagctgaaaa 27894098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 530 - 612
Target Start/End: Complemental strand, 18628643 - 18628561
Alignment:
Q  530 aaaataaattcaaactgtttttatacaacttataagctgttttcataagctttctcgtaaagcttatgaaaataatctgaaaa 612  Q
    |||||| | |||||||||||||||| || |||||| ||||||||||||| | ||| | | |||||||| |||||| |||||||    
T  18628643 aaaatatagtcaaactgtttttatataagttataaactgttttcataagttatcttggagagcttatggaaataagctgaaaa 18628561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 517 - 579
Target Start/End: Original strand, 53626733 - 53626795
Alignment:
Q  517 tataacaaagaataaaataaattcaaactgtttttatacaacttataagctgttttcataagc 579  Q
    |||||||||  |||||||||||||||| |||||| ||| ||  ||||||||||||||||||||    
T  53626733 tataacaaaagataaaataaattcaaaatgttttcatataagctataagctgttttcataagc 53626795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 528 - 613
Target Start/End: Original strand, 2996541 - 2996626
Alignment:
Q  528 ataaaataaattcaaactgtttttatacaacttataagctgttttcataagctttctcgtaaagcttatgaaaataatctgaaaaa 613  Q
    |||||||| | ||||| |||||||||| || ||||||| |||||||||||||| ||| | | ||| |||||||||||  |||||||    
T  2996541 ataaaatacagtcaaattgtttttatataagttataagttgttttcataagctatcttggagagcgtatgaaaataagttgaaaaa 2996626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 515 - 580
Target Start/End: Original strand, 49085944 - 49086009
Alignment:
Q  515 tatataacaaagaataaaataaattcaaactgtttttatacaacttataagctgttttcataagct 580  Q
    |||||||||||  |||||||||  ||||||| |||| |||||| ||||||| ||||||||||||||    
T  49085944 tatataacaaaagataaaataatgtcaaactattttcatacaagttataagttgttttcataagct 49086009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 560 - 612
Target Start/End: Original strand, 47800623 - 47800675
Alignment:
Q  560 tataagctgttttcataagctttctcgtaaagcttatgaaaataatctgaaaa 612  Q
    ||||||||||||||||||||| ||| | | ||||||||||||||| |||||||    
T  47800623 tataagctgttttcataagctatcttgaagagcttatgaaaataagctgaaaa 47800675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 517 - 580
Target Start/End: Complemental strand, 30207683 - 30207621
Alignment:
Q  517 tataacaaagaataaaataaattcaaactgtttttatacaacttataagctgttttcataagct 580  Q
    ||||||||| |||||||||||| ||||||||||| ||| ||  |||||| ||||||||||||||    
T  30207683 tataacaaaaaataaaataaat-caaactgttttcatataagctataagttgttttcataagct 30207621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 561 - 612
Target Start/End: Complemental strand, 52746909 - 52746858
Alignment:
Q  561 ataagctgttttcataagctttctcgtaaagcttatgaaaataatctgaaaa 612  Q
    |||||||||||||||||||| ||| |||| |||||||||||| | |||||||    
T  52746909 ataagctgttttcataagctatcttgtaaggcttatgaaaatcagctgaaaa 52746858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 528 - 580
Target Start/End: Complemental strand, 19429590 - 19429538
Alignment:
Q  528 ataaaataaattcaaactgtttttatacaacttataagctgttttcataagct 580  Q
    |||||||||| |||||||||||||||| || |  |||||| ||||||||||||    
T  19429590 ataaaataaagtcaaactgtttttatataagtcgtaagctcttttcataagct 19429538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 469 - 565
Target Start/End: Complemental strand, 46013461 - 46013365
Alignment:
Q  469 ttatagcataagtgattatcatacaagtgtaaatgtgtaaaccatctatataacaaagaataaaataaattcaaactgtttttatacaacttataag 565  Q
    |||||| ||||||||| || | | ||||||  |||||||||| || | |  ||||||  |||||||||| |||||||||||||||| || |||||||    
T  46013461 ttatagtataagtgataattaaataagtgtttatgtgtaaactatttctggaacaaaagataaaataaagtcaaactgtttttatataagttataag 46013365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 469 - 565
Target Start/End: Original strand, 46247127 - 46247223
Alignment:
Q  469 ttatagcataagtgattatcatacaagtgtaaatgtgtaaaccatctatataacaaagaataaaataaattcaaactgtttttatacaacttataag 565  Q
    |||||| ||||||||| || | | ||||||  |||||||||| || | |  ||||||  |||||||||| |||||||||||||||| || |||||||    
T  46247127 ttatagtataagtgataattaaataagtgtttatgtgtaaactatttctggaacaaaagataaaataaagtcaaactgtttttatataaattataag 46247223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000004; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 560 - 612
Target Start/End: Original strand, 27028831 - 27028883
Alignment:
Q  560 tataagctgttttcataagctttctcgtaaagcttatgaaaataatctgaaaa 612  Q
    ||||||||||||||||||||| ||| | | ||||||||||||||| |||||||    
T  27028831 tataagctgttttcataagctatcttggagagcttatgaaaataagctgaaaa 27028883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 468 - 547
Target Start/End: Complemental strand, 39392823 - 39392744
Alignment:
Q  468 tttatagcataagtgattatcatacaagtgtaaatgtgtaaaccatctatataacaaagaataaaataaattcaaactgt 547  Q
    ||||||||||||||| |||||||| |||||   |||| ||||| || | |||||||||  |||||||||| |||||||||    
T  39392823 tttatagcataagtgcttatcatataagtggctatgtataaactatttctataacaaaagataaaataaagtcaaactgt 39392744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 539 - 577
Target Start/End: Complemental strand, 32143136 - 32143098
Alignment:
Q  539 tcaaactgtttttatacaacttataagctgttttcataa 577  Q
    ||||||||||||||||||| |||||||| ||||||||||    
T  32143136 tcaaactgtttttatacaagttataagcggttttcataa 32143098  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 559 - 612
Target Start/End: Original strand, 5069696 - 5069749
Alignment:
Q  559 ttataagctgttttcataagctttctcgtaaagcttatgaaaataatctgaaaa 612  Q
    |||||||||||||||||||| | |||   ||||||||||||||||| |||||||    
T  5069696 ttataagctgttttcataagatatcttcgaaagcttatgaaaataagctgaaaa 5069749  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 515 - 604
Target Start/End: Complemental strand, 37822773 - 37822684
Alignment:
Q  515 tatataacaaagaataaaataaattcaaactgtttttatacaacttataagctgttttcataagctttctcgtaaagcttatgaaaataa 604  Q
    ||||||||||| |||||| ||||||||||||||||  ||| ||  ||||||||||||  | ||| | ||| | | |||||||||||||||    
T  37822773 tatataacaaaaaataaattaaattcaaactgtttacatataagatataagctgtttatagaagttatcttgaagagcttatgaaaataa 37822684  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 528 - 612
Target Start/End: Complemental strand, 5071069 - 5070985
Alignment:
Q  528 ataaaataaattcaaactgtttttatacaacttataagctgttttcataagctttctcgtaaagcttatgaaaataatctgaaaa 612  Q
    |||||||||| ||||||| |||| ||| ||||| |||| |||||||||||| | ||||| | |||||  | |||||| |||||||    
T  5071069 ataaaataaagtcaaacttttttcatataacttgtaagatgttttcataaggtctctcggagagctttcggaaataagctgaaaa 5070985  T

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Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 528 - 580
Target Start/End: Complemental strand, 6509405 - 6509353
Alignment:
Q  528 ataaaataaattcaaactgtttttatacaacttataagctgttttcataagct 580  Q
    |||||||||| ||||| ||| |||||| ||  |||||||||||||||||||||    
T  6509405 ataaaataaagtcaaattgtatttatataagctataagctgttttcataagct 6509353  T

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Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 528 - 612
Target Start/End: Complemental strand, 33714337 - 33714254
Alignment:
Q  528 ataaaataaattcaaactgtttttatacaacttataagctgttttcataagctttctcgtaaagcttatgaaaataatctgaaaa 612  Q
    |||||||||| ||||||| ||||  |||||  |||||||| |||||||||||| ||| | | ||||||| ||||||| |||||||    
T  33714337 ataaaataaagtcaaactattttg-tacaatctataagctattttcataagctatctgggagagcttataaaaataagctgaaaa 33714254  T

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Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 560 - 612
Target Start/End: Complemental strand, 37353319 - 37353267
Alignment:
Q  560 tataagctgttttcataagctttctcgtaaagcttatgaaaataatctgaaaa 612  Q
    |||||||||||||| |||||| |||   | |||||||||||||||||||||||    
T  37353319 tataagctgttttcttaagctatctttgagagcttatgaaaataatctgaaaa 37353267  T

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Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 517 - 577
Target Start/End: Complemental strand, 40728531 - 40728471
Alignment:
Q  517 tataacaaagaataaaataaattcaaactgtttttatacaacttataagctgttttcataa 577  Q
    |||||||||  |||||||||| ||||||||||||| ||||| | |||| ||||||| ||||    
T  40728531 tataacaaaagataaaataaagtcaaactgtttttttacaagtcataacctgttttaataa 40728471  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000004; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 528 - 604
Target Start/End: Complemental strand, 36863727 - 36863651
Alignment:
Q  528 ataaaataaattcaaactgtttttatacaacttataagctgttttcataagctttctcgtaaagcttatgaaaataa 604  Q
    |||||||||| ||||||  |||||||| || ||||||  |||||||||||||| ||| | | |||||||||||||||    
T  36863727 ataaaataaagtcaaacaatttttatataagttataaattgttttcataagctatcttggagagcttatgaaaataa 36863651  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 518 - 604
Target Start/End: Original strand, 14666506 - 14666592
Alignment:
Q  518 ataacaaagaataaaataaattcaaactgtttttatacaacttataagctgttttcataagctttctcgtaaagcttatgaaaataa 604  Q
    ||||||||  |||||||||| |||||||| ||| ||| || ||||||| |||||||| ||||| ||| |  | ||||||||||||||    
T  14666506 ataacaaaagataaaataaagtcaaactgatttcatataagttataagttgttttcacaagctatcttggtatgcttatgaaaataa 14666592  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 519 - 584
Target Start/End: Original strand, 40145421 - 40145486
Alignment:
Q  519 taacaaagaataaaataaattcaaactgtttttatacaacttataagctgttttcataagctttct 584  Q
    |||||||  |||||||||| ||||  |||||||||  || ||||||| ||||||||||||||||||    
T  40145421 taacaaaagataaaataaagtcaagttgtttttatgtaagttataagttgttttcataagctttct 40145486  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 559 - 612
Target Start/End: Complemental strand, 43985074 - 43985021
Alignment:
Q  559 ttataagctgttttcataagctttctcgtaaagcttatgaaaataatctgaaaa 612  Q
    ||||||| |||||||||||||| ||| | | ||||||||||||||| |||||||    
T  43985074 ttataagttgttttcataagctatcttgaagagcttatgaaaataagctgaaaa 43985021  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 560 - 612
Target Start/End: Original strand, 9174815 - 9174867
Alignment:
Q  560 tataagctgttttcataagctttctcgtaaagcttatgaaaataatctgaaaa 612  Q
    ||||||||||||||||||||| |||   | ||||||||||||||| |||||||    
T  9174815 tataagctgttttcataagctatcttacagagcttatgaaaataagctgaaaa 9174867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 528 - 604
Target Start/End: Original strand, 9556207 - 9556283
Alignment:
Q  528 ataaaataaattcaaactgtttttatacaacttataagctgttttcataagctttctcgtaaagcttatgaaaataa 604  Q
    |||||||||| ||||  |||||| ||||||  ||||| ||||||||||||||| ||    |||||||||||||||||    
T  9556207 ataaaataaagtcaacgtgttttcatacaagctataaactgttttcataagctatcctagaaagcttatgaaaataa 9556283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 560 - 612
Target Start/End: Original strand, 36852472 - 36852524
Alignment:
Q  560 tataagctgttttcataagctttctcgtaaagcttatgaaaataatctgaaaa 612  Q
    ||||| ||||||||||||||| ||| | | |||||||| ||||||||||||||    
T  36852472 tataaactgttttcataagctatcttggagagcttatggaaataatctgaaaa 36852524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 450 - 498
Target Start/End: Original strand, 43808466 - 43808514
Alignment:
Q  450 aaatagtttaattgagtgtttatagcataagtgattatcatacaagtgt 498  Q
    ||||||||||||| ||||||||||||||||| |  ||||||| ||||||    
T  43808466 aaatagtttaattaagtgtttatagcataagcgcgtatcatataagtgt 43808514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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