View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18452_low_5 (Length: 558)
Name: NF18452_low_5
Description: NF18452
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18452_low_5 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 399; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 14 - 541
Target Start/End: Original strand, 6699815 - 6700327
Alignment:
| Q |
14 |
agatgaattggtggaggatttagttactcaaatgtcctattcaacaccaatttattagtgaatttatgtagcatactttatttcgatgtatatttggtat |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
6699815 |
agatgaattggtggaggatttagttactcaaatgtcctattcagcaccaatttattagtgaatttatgtagcatactttgtttcgatgtatatttggtat |
6699914 |
T |
|
| Q |
114 |
agtgtccttgacaaatgataaacaaaattcaactctaaatctttctactg-ttttagattagaatgaatgaaggattacaattatgcacctaatttgcat |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| || |||||||||||||||||||||| |
|
|
| T |
6699915 |
agtgtccttgacaaatgataaacaaaattcaactctaaatctttctactggttttagattagaatgaatgaaggcttgcaattatgcacctaatttgcat |
6700014 |
T |
|
| Q |
213 |
tgataaatatcagttatccaaatattatgacagaaaataaactgtaagcaatatgtacatgtggtataacttacctctcttttgaaggaattaaattcaa |
312 |
Q |
| |
|
|||||||||||||| |||| |||||||| |||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
6700015 |
tgataaatatcagtcatcccaatattataacagaatataaagtgtaagcaatatgtacatgtggtataacttacctctcttttgaaggaattaacttcaa |
6700114 |
T |
|
| Q |
313 |
cttgctccattcaaagagatataatgtgtacaaaaatcttatttatgaatggaagtggattgggattatataaaagctatatatgaaacttgcacttgag |
412 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||| |||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
6700115 |
cttgctccattcaaagagatataatgtg-acaaacatcttatttatgaatgaaagtggatttggattatataaaagctatatatgaaacttgcact---- |
6700209 |
T |
|
| Q |
413 |
atcgtgctcactgatatgactttaaagtgttgtattctatgtaattcttatttagagttggtgttaattgccttaaaaatcattgtatctttggttttca |
512 |
Q |
| |
|
||||||||||||| |||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6700210 |
-----------tgatatgactttatagtggtgtattctatgtaattcttatttagagttgatgttaattgccttaaaaatcattgtatctttggttttca |
6700298 |
T |
|
| Q |
513 |
tcctccttagagcataccttatgcttctt |
541 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
6700299 |
tcctccttagagcataccttatgcttctt |
6700327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 298; Significance: 1e-167; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 14 - 374
Target Start/End: Complemental strand, 20914132 - 20913771
Alignment:
| Q |
14 |
agatgaattggtggaggatttagttactcaaatgtcctattcaacaccaatttattagtgaatttatgtagcatactttatttcgatgtatatttggtat |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
20914132 |
agatgaattggtggaggatttagttactcaaatgtcctattcagcaccaatttattagtgaatttatgtagcatacttcgtttcgatgtatatttggtat |
20914033 |
T |
|
| Q |
114 |
agtgtccttgacaaatgataaacaaaattcaactctaaatctttctactg-ttttagattagaatgaatgaaggattacaattatgcacctaatttgcat |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
20914032 |
agtgtccttgacaaatgataaacaaaattcaactctaaatctttctactggttttatattagaatgaacgaaggattacaattatgcacctaatttgcat |
20913933 |
T |
|
| Q |
213 |
tgataaatatcagttatccaaatattatgacagaaaataaactgtaagcaatatgtacatgtggtataacttacctctcttttgaaggaattaaattcaa |
312 |
Q |
| |
|
|||||||||||||| |||| ||||| ||||||||| ||||| |||||||||||||||||||| ||| ||||||||||||||||||||||||||| ||||| |
|
|
| T |
20913932 |
tgataaatatcagtcatcccaatatgatgacagaagataaagtgtaagcaatatgtacatgtcgtaaaacttacctctcttttgaaggaattaacttcaa |
20913833 |
T |
|
| Q |
313 |
cttgctccattcaaagagatataatgtgtacaaaaatcttatttatgaatggaagtggattg |
374 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
20913832 |
cttgctccattcaaagagatataatgtgtacaaaaaccttatttatgaatggaagtggattg |
20913771 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 408 - 544
Target Start/End: Complemental strand, 20913773 - 20913637
Alignment:
| Q |
408 |
ttgagatcgtgctcactgatatgactttaaagtgttgtattctatgtaattcttatttagagttggtgttaattgccttaaaaatcattgtatctttggt |
507 |
Q |
| |
|
||||||| |||||||||||||||||||||||||| |||| ||||| ||||||||||||||||||| |||||||||||||||||||||||| ||||||||| |
|
|
| T |
20913773 |
ttgagatagtgctcactgatatgactttaaagtggtgtactctatataattcttatttagagttgatgttaattgccttaaaaatcattgcatctttggt |
20913674 |
T |
|
| Q |
508 |
tttcatcctccttagagcataccttatgcttcttttt |
544 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20913673 |
tttcatcctccttagagcataccttatgcttcttttt |
20913637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 41 - 102
Target Start/End: Complemental strand, 21137756 - 21137695
Alignment:
| Q |
41 |
tcaaatgtcctattcaacaccaatttattagtgaatttatgtagcatactttatttcgatgt |
102 |
Q |
| |
|
||||||||| |||||| ||||||||||| ||||||||||||||||||||| ||||||||| |
|
|
| T |
21137756 |
tcaaatgtcttattcagttccaatttattaatgaatttatgtagcatactttgtttcgatgt |
21137695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 173; Significance: 9e-93; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 173; E-Value: 9e-93
Query Start/End: Original strand, 170 - 544
Target Start/End: Original strand, 25533843 - 25534217
Alignment:
| Q |
170 |
attagaatgaatgaaggattacaattatgcacctaatttgcattgataaatatcagttatccaaatattatgacagaaaataaactgtaagcaatatgta |
269 |
Q |
| |
|
|||||||||||||||||||| |||||||| | |||||||||||| ||||||||||| |||| ||||||||||||||| ||| | ||||||| | || | |
|
|
| T |
25533843 |
attagaatgaatgaaggattgcaattatgggcttaatttgcattggtaaatatcagtcatcccaatattatgacagaagatagagggtaagcattctgaa |
25533942 |
T |
|
| Q |
270 |
catgtggtataacttacctctcttttgaaggaattaaattcaacttgctccattcaaaga-gatataatgtgtacaaaaatcttatttatgaatggaagt |
368 |
Q |
| |
|
|| ||||||||| |||||||||||| ||||||||||| |||||||||||||||||||||| ||||||||||| |||||||||||||||||| |
|
|
| T |
25533943 |
cacgtggtataatttacctctctttggaaggaattaacttcaacttgctccattcaaagaggatataatgtg----------ttatttatgaatggaagt |
25534032 |
T |
|
| Q |
369 |
ggattgggattatataaaagctatatatgaaacttgcacttgagatcgtgctcactgatatgactttaaagtg-------ttgtattctatgtaattctt |
461 |
Q |
| |
|
|||||||||||||||||||| | ||||||||||||||||||||||| |||| ||||||||||||||||||||| |||| |||||||||||||| |
|
|
| T |
25534033 |
ggattgggattatataaaagttgtatatgaaacttgcacttgagatagtgcccactgatatgactttaaagtggtgtgcagtgtactctatgtaattctt |
25534132 |
T |
|
| Q |
462 |
atttaga--gttggtgttaattgccttaaaaatcattgtatctttggttttcatcctccttagagcataccttatgcttcttttt |
544 |
Q |
| |
|
|||| || |||| ||| ||||||| ||||| |||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
25534133 |
atttggactcttggccttagctgccttagaaatctttgtatctttggttttcaacctccttagagcataccttatgcttcttttt |
25534217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 59 - 160
Target Start/End: Original strand, 25532990 - 25533091
Alignment:
| Q |
59 |
accaatttattagtgaatttatgtagcatactttatttcgatgtatatttggtatagtgtccttgacaaatgataaacaaaattcaactctaaatctttc |
158 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| |||| ||||||||| |
|
|
| T |
25532990 |
accattttattagtgaatttatgtagcatactttgtttcgatgtatctttggtatagtgtccttgacaaatgataaacaaaattaaacttcaaatctttc |
25533089 |
T |
|
| Q |
159 |
ta |
160 |
Q |
| |
|
|| |
|
|
| T |
25533090 |
ta |
25533091 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 98; Significance: 5e-48; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 60 - 204
Target Start/End: Original strand, 2303734 - 2303878
Alignment:
| Q |
60 |
ccaatttattagtgaatttatgtagcatactttatttcgatgtatatttggtatagtgtccttgacaaatgataaacaaaattcaactctaaatctttct |
159 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||| ||||| |||||||||||| ||||| ||||||||||||| | |
|
|
| T |
2303734 |
ccaatttattagtgaatttatgtagcatactttgtttcgatgtatatttggtataatgtacttgaaaaatgataaacagaattcgactctaaatcttt-t |
2303832 |
T |
|
| Q |
160 |
act-gttttagattagaatgaatgaaggattacaattatgcaccta |
204 |
Q |
| |
|
|| ||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
2303833 |
gctggttttagattagaatgaatgaaggattgcaattatgcaccta |
2303878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University