View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18452_low_6 (Length: 543)
Name: NF18452_low_6
Description: NF18452
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18452_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 19 - 528
Target Start/End: Original strand, 37633189 - 37633665
Alignment:
| Q |
19 |
catgaagttataatatgctaccttttaacattattttattggtaaatgtttgatatacattcatatgtgtatacactttaaagaaaaatagataaaagaa |
118 |
Q |
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| T |
37633189 |
catgaagttatattacgctaccttttaacattattttattggtaaatgtttgatatacattcatatgtgtatacactttaaagaaaaatagataaaagaa |
37633288 |
T |
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| Q |
119 |
aatattagaggttaataacgtgataatttgttgtattttatttcatgcattattatcatcattatagttagtttgttactaagttttatgatttcctatc |
218 |
Q |
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| T |
37633289 |
aatattataggttaataacgtgataatttgttgtattttatttcatgcattattat---------agttagtttgttactatgttttatgatttcctat- |
37633378 |
T |
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| Q |
219 |
ctatacatgaagtaggcttcttctatgttgt---caaatgacatatttcacgtgccctttctgcaacatattcagcattgtatataatagtgccactagt |
315 |
Q |
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| T |
37633379 |
----acatgaagtaggcttcttctatgttgttgtcaaatgacacatttcacgtgccctttctgcaacatattcagcatggtata-----gtgccactagt |
37633469 |
T |
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| Q |
316 |
agtttatcttggctcacccgtcagtgaacatttatataccaccacatctctttggctagctagctatgacgttttcaaccacagcctgagacagagtttc |
415 |
Q |
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| T |
37633470 |
agta-atcttggctcactagtcagtgaacattt----------------ctttggctagctagctatgacgttttcaaccacagcctgagacagagtttc |
37633552 |
T |
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| Q |
416 |
ttagattttgaggctatggcatggagacgtcacccgatcatagcacatgttaattttatcattttcaaatcaatttcaattgtttctgtatcttatatat |
515 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
37633553 |
ttagattttgaggctatggcatggagacgtcacccgatcatagcacatgttaattttatcattttcaattcaatttcaattgtttctgtatcttatatat |
37633652 |
T |
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