View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18452_low_7 (Length: 521)
Name: NF18452_low_7
Description: NF18452
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18452_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 481; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 481; E-Value: 0
Query Start/End: Original strand, 19 - 511
Target Start/End: Complemental strand, 52926572 - 52926080
Alignment:
| Q |
19 |
attactgcaaacactgcggatcccatgttctcatcactggtaatgaatcattcattcataataacatatcaaattgaattgaaagttgtaacctaattgc |
118 |
Q |
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| T |
52926572 |
attactgcaaacactgcggatcccatgttctcatcactggtaatgaatcattcattcataataacacatcaaattgaattgaaagtagtaacctaattgc |
52926473 |
T |
|
| Q |
119 |
aatcgcagatacccagttgcagaaaatgcctcgaagaaacactgacagagcttacgttttggataagaccaaacatcttgcaagattcaatattcacgaa |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52926472 |
aatcgcagatacccagttgcagaaaatgcctcgaagaaacactgacagagcttacgttttggataagaccaaacatcttgcaagattcaatattcacgaa |
52926373 |
T |
|
| Q |
219 |
gctggcaacgttctcttaaagcgtggccaaggcaaactcgagaaacaattccgcatgaattgcatcggttgcggtctctttgtttgctatcgctctcaac |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52926372 |
gctggcaacgttctcttaaagcgtggccaaggcaaactcgagaaacaattccgcatgaattgcatcggttgcggtctctttgtttgctatcgctctcaac |
52926273 |
T |
|
| Q |
319 |
aagacttcgattcttcctctttcatttatgttcttgaccaagcactcagtactgttgctgctgaaaccaacccacaggatgctcccgttccaccctgcat |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52926272 |
aagacttcgattcttcctctttcatttatgttcttgaccaagcactcagtactgttgctgctgaaaccaacccacaggatgctcccgttccaccctgcat |
52926173 |
T |
|
| Q |
419 |
ttccactcttgaaggtggtcttgttcaacttgctattgaagttgaggatcgtgctcaccgctccgcaatcaccagagtaaatgctgatgatgt |
511 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52926172 |
ttccactcttgaaggtggtcttgttcaacttgctattgaagttgaagatcgtgctcaccgctccgcaatcaccagagtaaatgctgatgatgt |
52926080 |
T |
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