View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18453_high_10 (Length: 595)
Name: NF18453_high_10
Description: NF18453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18453_high_10 |
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Alignment Details
Target: chr1 (Bit Score: 491; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 491; E-Value: 0
Query Start/End: Original strand, 14 - 520
Target Start/End: Original strand, 36127455 - 36127961
Alignment:
| Q |
14 |
catcactttgcacttctcttgtatcctaactccaacattccttgtgaaattctctcccaaagtggtgccttgttattgctgtttccttccttttcttcat |
113 |
Q |
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| T |
36127455 |
catctctttgcacttctcttgtatcctaactccaacattccttgtgaaattctctcccaaagtggtgccttgttattgctgtttccttccttttcttcat |
36127554 |
T |
|
| Q |
114 |
tgttgttgttgcacctcaagtttatcaatgccaacacttcatcttttggccatcttctaccaatatcgtctctctcgccgctcgatataaggctatatga |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36127555 |
tgttgttgttgcacctcaagtttatcaatgccaacacttcatcttttggccatcttctaccaatatcgtctctctcgccgctcgatataaggctatatga |
36127654 |
T |
|
| Q |
214 |
agaaataggattgttgttgcgaggttgagccaccaaagtagcagaagaagaaggaagggttgagctagggttttcaggtattggttgaagagtttttata |
313 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
36127655 |
agaaataggattgttgttgcgaggttgagccaccaaagtagtagaagaagaaggaagggttgagctagggttttcaggtattggttgaagagttttttta |
36127754 |
T |
|
| Q |
314 |
agagtttcaggattagggttttgtgagtgcaatgttgaagaagaagagtttgaagttaatgttgctaaataagcttgaagttgagttgacattgaagcta |
413 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
36127755 |
agagtttcaggattagggttttgtgagtgcaatgttgaagaagaagagtttgaagttaatgttgctaaataagcttgaagttgagttgacattgaagtta |
36127854 |
T |
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| Q |
414 |
gggatgaagaattagcacttgtcgagaatttgttcaagaattgaattatatgtgcttgtctatcaccagcaatagcttgttcatgtgccatcaactcaag |
513 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36127855 |
gggatgaagaattagcacttgtcgagaatttgttcaagaattgaattatatgtgcttgtctatcaccagcaatagcttgttcatgtgccatcaactcaag |
36127954 |
T |
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| Q |
514 |
ctctttg |
520 |
Q |
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| T |
36127955 |
ctctttg |
36127961 |
T |
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