View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18453_high_11 (Length: 564)
Name: NF18453_high_11
Description: NF18453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18453_high_11 |
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Alignment Details
Target: chr3 (Bit Score: 521; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 521; E-Value: 0
Query Start/End: Original strand, 7 - 546
Target Start/End: Original strand, 46262924 - 46263466
Alignment:
| Q |
7 |
acatcatcaacatcagctgcttgtcgcaagatcccttctactcgggctcctattttgtaatatttattaaattcaattagatttgtattccatgtgaaac |
106 |
Q |
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| T |
46262924 |
acatcatcaacatcagctgcttgtcgcaagatcccttctactcgggctcctattttgtaatatttattaaattcaattagatttgtattccatgtgaaac |
46263023 |
T |
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| Q |
107 |
acattaataatttttgctacataaagagccattcaggctcagtattgcttctaagtaactaatgcaagtccttcacaatacccacacgtgtatgtgtaag |
206 |
Q |
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| T |
46263024 |
acattaataatttttgctacataaagagccattcaggctcagtattgcttctaagtaactaatgcaagtccttcccaatacccacacgtgtatgtgtaag |
46263123 |
T |
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| Q |
207 |
aaaacccaccatgctcttctatgaatgtcaatgctttctccaaaaatgtaggacttccatcaacatcctccaaagcaagtaaaattggtagaccaattac |
306 |
Q |
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| T |
46263124 |
aaaacccaccatgctcttctatgaatgtcaatgctttctccaaaaatgtaggacttccatcaacatcctccaaagcaagtaaaattggtagaccaattac |
46263223 |
T |
|
| Q |
307 |
agtagatttggctggttctttttcatgcactgaagaaatcattcaaaggaaagaaaatttattgacttttatagcattagattaaatataagtataatca |
406 |
Q |
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| T |
46263224 |
agtagatttggctggttctttttcatgcactgaagaaatcattcaaaggaaagaaaatttattgacttttatagcattagattaaatataagtataatca |
46263323 |
T |
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| Q |
407 |
catcaaatttcacaacaaatgtattttgcaaatgtcataattctaaattaggggggcaaaaagaagagagagaaaaaaccaggtacacatttatacagaa |
506 |
Q |
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| T |
46263324 |
catcaaatttcacaacaaatgtattttgcaaatgtcataactctaaattaggggggcaaaaagaagagagagaaaaaaccaggtacacatttatacagaa |
46263423 |
T |
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| Q |
507 |
agagacatcatatca---gacggtacaaatttgtaaccattac |
546 |
Q |
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| T |
46263424 |
agagacatcatatcagacgacggtacaaatttgtaaccattac |
46263466 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 207 - 294
Target Start/End: Complemental strand, 27776683 - 27776596
Alignment:
| Q |
207 |
aaaacccaccatgctcttctatgaatgtcaatgctttctccaaaaatgtaggacttccatcaacatcctccaaagcaagtaaaattgg |
294 |
Q |
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|||||| |||||||||||||||||| ||| ||||| |||||||| | ||| |||| ||||| ||||||||||||||||||||||| |
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| T |
27776683 |
aaaacctaccatgctcttctatgaacctcagggctttttccaaaaaagatggagttccgtcaacttcctccaaagcaagtaaaattgg |
27776596 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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