View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18453_high_13 (Length: 544)
Name: NF18453_high_13
Description: NF18453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18453_high_13 |
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Alignment Details
Target: chr4 (Bit Score: 482; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 482; E-Value: 0
Query Start/End: Original strand, 14 - 527
Target Start/End: Complemental strand, 22012551 - 22012038
Alignment:
| Q |
14 |
cacagacattgtaattaattagtgatatgattatacctgaaaactaatgtgctttaatcgtatatatgtaattgttgaataaagcagaccttttagatac |
113 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22012551 |
cacagacattgtaattaattagtgatatgattatacctgaaaaataatgtgctttaatcgtatatatgtaattgttgaataaagcagaccttttagatac |
22012452 |
T |
|
| Q |
114 |
tgattgagacactgatcctgcagatatcatgtaccgcgagcatggttgaagccagatagcaacactcttgtattgtttgaggaaagcggaggcgacccta |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
22012451 |
tgattgagacactgatcctgcagatatcatgtaccgcgagcatggttgaagccagatagcaacacttttgtattgtttgaggaaagcggaggcgacccta |
22012352 |
T |
|
| Q |
214 |
caaaaatatcttttggtacaaaacagatagaaagtgtgtgttcacgtgtaactgaatctcaccctccacctgtagacacgtggaattcggatacagaatc |
313 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||| || ||||||| |
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| T |
22012351 |
caaaaatatcttttggtacaaaacagatagaaagtgtgtgttcacatgtaactgaatctcaccctccacctgtagacacatggaattcgaatgcagaatc |
22012252 |
T |
|
| Q |
314 |
agaaagaaaggtaggtcctgtactgtcactggaatgcccttatcctaatcaggtgatctcttccattaaatttgcaagctttggaacgcctcgtgggact |
413 |
Q |
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| T |
22012251 |
agaaagaaaggtaggtcctgtactgtcactggaatgcccttatcctaatcaggcgatctcttccattaaatttgcaagctttggaacgcctcgtgggact |
22012152 |
T |
|
| Q |
414 |
tgtggaaactacaaccacggaagctgcagcagcaatagggctctatccattgtgcaaaaggtattattatgagtttcatttttatacacggccagtgtta |
513 |
Q |
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| T |
22012151 |
tgtggaaactacaaccacggaagctgcagcagcaatagggctctatccattgtgcaaaaggtattattatgagtttcatttttatacacggccagtgtta |
22012052 |
T |
|
| Q |
514 |
atattttttacatt |
527 |
Q |
| |
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|||| ||||||||| |
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| T |
22012051 |
atatattttacatt |
22012038 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 73; Significance: 4e-33; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 174 - 450
Target Start/End: Original strand, 40094067 - 40094343
Alignment:
| Q |
174 |
aacactcttgtattgtttgaggaaagcggaggcgaccctacaaaaatatcttttggtacaaaacagatagaaagtgtgtgttcacgtgtaactgaatctc |
273 |
Q |
| |
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|||||||||||||||||||||||||| || || || || ||| |||||||||||| |||||||||||||| |||||||||| | | |||| |||| |||| |
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| T |
40094067 |
aacactcttgtattgtttgaggaaagtggtggtgatccaacacaaatatcttttgctacaaaacagataggaagtgtgtgtgcccatgtatctgattctc |
40094166 |
T |
|
| Q |
274 |
accctccacctgtagacacgtggaattcggatacagaatcagaaagaaaggtaggtcctgtactgtcactggaatgcccttatcctaatcaggtgatctc |
373 |
Q |
| |
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|||| || | ||||| |||||| ||||||||||||| |||| ||||| |||| ||||| || | || ||| ||| ||||||||| || || |
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| T |
40094167 |
acccacctcaaatagacttgtggaaccaagatacagaatcagggggaaaagtagggcctgcactgttgctcaactgtcctaatcataatcaggtaatatc |
40094266 |
T |
|
| Q |
374 |
ttccattaaatttgcaagctttggaacgcctcgtgggacttgtggaaactacaaccacggaagctgcagcagcaata |
450 |
Q |
| |
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|||||| ||||||||||||| |||||| || | ||||| |||||||||| | ||| |||| ||||||||||||||| |
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| T |
40094267 |
ttccatcaaatttgcaagctatggaacaccactagggacgtgtggaaacttctaccgcggacgctgcagcagcaata |
40094343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 172 - 450
Target Start/End: Original strand, 40081783 - 40082061
Alignment:
| Q |
172 |
gcaacactcttgtattgtttgaggaaagcggaggcgaccctacaaaaatatcttttggtacaaaacagatagaaagtgtgtgttcacgtgtaactgaatc |
271 |
Q |
| |
|
||||||||||||||||||||||||||| || || || || || |||||||||||| |||||||||| | |||||||||||||||| |||| |||| || |
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| T |
40081783 |
gcaacactcttgtattgtttgaggaaaatggcggtgatccgacccaaatatcttttgctacaaaacagctggaaagtgtgtgttcacatgtatctgattc |
40081882 |
T |
|
| Q |
272 |
tcaccctccacctgtagacacgtggaattcggatacagaatcagaaagaaaggtaggtcctgtactgtcactggaatgcccttatcctaatcaggtgatc |
371 |
Q |
| |
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|||||| || | ||||| |||||| ||||||||||||| |||| ||||| |||| |||| || || ||| ||| ||||||||| || |
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| T |
40081883 |
tcacccacctcaaatagacttgtggaaccaagatacagaatcagggggaaaagtagggcctgctctgttgctcagttgtcctaatcataatcaggtaatt |
40081982 |
T |
|
| Q |
372 |
tcttccattaaatttgcaagctttggaacgcctcgtgggacttgtggaaactacaaccacggaagctgcagcagcaata |
450 |
Q |
| |
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|| ||||| ||||||||||||| |||||| ||| ||||| |||||||||| | ||| |||| ||||||||||||||| |
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| T |
40081983 |
tcatccatcaaatttgcaagctatggaacacctttagggacgtgtggaaacttctaccgcggacgctgcagcagcaata |
40082061 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 172 - 450
Target Start/End: Original strand, 40063433 - 40063711
Alignment:
| Q |
172 |
gcaacactcttgtattgtttgaggaaagcggaggcgaccctacaaaaatatcttttggtacaaaacagatagaaagtgtgtgttcacgtgtaactgaatc |
271 |
Q |
| |
|
||||||||||||||||||||||||||| || || || || ||| ||||| |||||| |||||||||| |||||||| ||||| | | |||| |||| || |
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| T |
40063433 |
gcaacactcttgtattgtttgaggaaaatggcggtgatccaacacaaatagcttttgctacaaaacagctagaaagtttgtgtgcccatgtatctgattc |
40063532 |
T |
|
| Q |
272 |
tcaccctccacctgtagacacgtggaattcggatacagaatcagaaagaaaggtaggtcctgtactgtcactggaatgcccttatcctaatcaggtgatc |
371 |
Q |
| |
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|||||| || | ||||| |||||| |||||| |||| |||| ||||| |||| ||||| || | || ||| ||| ||||||||| ||| |
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| T |
40063533 |
tcacccacctcaaatagacttgtggaaccaagatacaacatcatggggaaaagtagggcctgcactgttgctcaactgtcctaatcataatcaggtaatc |
40063632 |
T |
|
| Q |
372 |
tcttccattaaatttgcaagctttggaacgcctcgtgggacttgtggaaactacaaccacggaagctgcagcagcaata |
450 |
Q |
| |
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| |||||| ||||||||||||| |||||| || | ||||| || ||||||| | ||| |||| ||||||||||||||| |
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| T |
40063633 |
ttttccatcaaatttgcaagctatggaacaccactggggacatgcggaaacttctaccgcggacgctgcagcagcaata |
40063711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 369 - 400
Target Start/End: Complemental strand, 8138088 - 8138057
Alignment:
| Q |
369 |
atctcttccattaaatttgcaagctttggaac |
400 |
Q |
| |
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|||||||||||||||||||||||||||||||| |
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|
| T |
8138088 |
atctcttccattaaatttgcaagctttggaac |
8138057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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