View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18453_high_15 (Length: 505)
Name: NF18453_high_15
Description: NF18453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18453_high_15 |
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| [»] scaffold0009 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 428; Significance: 0; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 18 - 497
Target Start/End: Complemental strand, 1348922 - 1348443
Alignment:
| Q |
18 |
aataacggcgttgtcacagttgttgacggtcaatgacttaccagacgagatactaactcacattatctcttttctcccattcaaagacgctttcagaact |
117 |
Q |
| |
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|||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
1348922 |
aataacggcgttgtcacaattgttgacggtcaacgacttaccagacgagatactaactcacattatctcttttctcacattcaaagacgctttcagaact |
1348823 |
T |
|
| Q |
118 |
accattctttctaagagatggttcccattattccacacacttcccattccccacatcgacgacaaagaagtgaaaaacggaaaggattggattcactttc |
217 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1348822 |
accattctttctaagagatggttcccattattccacacacttccgattccccacatcgacgacaaagaagtgaaaaacggaaaggattggattcactttc |
1348723 |
T |
|
| Q |
218 |
gtcaaatgttggatgttgtaatgctctccccacctgcgcaactacaaaccctcaaatcttttcatctaacatgtggttcgtaactctgggggacttattg |
317 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
1348722 |
gtcaaatgttggatgttgtaatgctctccccacctgcgcaactacaaaccctcaaatcttttcatctaacatgtggttcgaaactctgggggacttattg |
1348623 |
T |
|
| Q |
318 |
tttcggttttaacgactggataaaagcagcaaaacatcgtggtgttgaggatctctatctaaatttgttacacgtccctttggcgctaaccattttccgt |
417 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||| | ||||||||||| | |
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| T |
1348622 |
tttcggttttaacgactggataaaagcagcaaaacatcgtggtgttgtggatctctatctaaacttgttacacgtccctttggccccaaccattttccat |
1348523 |
T |
|
| Q |
418 |
tgcaaaacacttgtggttctaaaattaaagaatttatgtgtaaacaccatgtttcttcgttcggttcatcttcctatgct |
497 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||| | |||||||||||||||||||||| |
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|
| T |
1348522 |
tgcaaaacacttgtggttctaaaattaaagaatttacgtgtaaacaccatgtttcgtagttcggttcatcttcctatgct |
1348443 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 47 - 158
Target Start/End: Original strand, 17391577 - 17391688
Alignment:
| Q |
47 |
tcaatgacttaccagacgagatactaactcacattatctcttttctcccattcaaagacgctttcagaactaccattctttctaagagatggttcccatt |
146 |
Q |
| |
|
|||||||||| || || |||||||||||||||||| ||||||| || |||| |||||||||||| ||||| ||| ||||||| || |||||| || |||| |
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| T |
17391577 |
tcaatgacttccctgatgagatactaactcacattctctctttgcttccatgcaaagacgcttttagaaccaccgttctttcgaaaagatgggtctcatt |
17391676 |
T |
|
| Q |
147 |
attccacacact |
158 |
Q |
| |
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|| |||| |||| |
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|
| T |
17391677 |
atgccactcact |
17391688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 47 - 148
Target Start/End: Original strand, 20110845 - 20110946
Alignment:
| Q |
47 |
tcaatgacttaccagacgagatactaactcacattatctcttttctcccattcaaagacgctttcagaactaccattctttctaagagatggttcccatt |
146 |
Q |
| |
|
|||| ||||| |||||||| |||||||||||||| |||||||||| ||||||||||||||||||| ||| ||| |||| || |||| |||| || |||| |
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| T |
20110845 |
tcaacgacttcccagacgatatactaactcacatcgtctcttttcttccattcaaagacgctttcaaaaccaccgttctctcaaagaaatgggtctcatt |
20110944 |
T |
|
| Q |
147 |
at |
148 |
Q |
| |
|
|| |
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|
| T |
20110945 |
at |
20110946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 47 - 250
Target Start/End: Complemental strand, 19970663 - 19970460
Alignment:
| Q |
47 |
tcaatgacttaccagacgagatactaactcacattatctcttttctcccattcaaagacgctttcagaactaccattctttctaagagatggttcccatt |
146 |
Q |
| |
|
|||| ||||| |||||||| ||||||||||||||| |||||||||| ||| ||| ||||||||||||||| ||| | ||||| |||| ||| || |||| |
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|
| T |
19970663 |
tcaacgacttcccagacgatatactaactcacattctctcttttcttccaatcagagacgctttcagaaccaccgtgctttccaagacgtgggtctcatt |
19970564 |
T |
|
| Q |
147 |
attccacacacttcccattccccacatcgacgacaaagaagtgaaaaacggaaaggattggattcactttcgtcaaatgttggatgttgtaatgctctcc |
246 |
Q |
| |
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| | || |||| || |||| |||| ||||| | ||||| ||||| || | |||||| |||||| || | |||||||||| ||| || ||| ||||| |
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| T |
19970563 |
gtgctactcactcccgattctccacttcgacaataaagacgtgaacaatgtaaaggaacagattcagttccatcaaatgttgaatgccgttatgttctcc |
19970464 |
T |
|
| Q |
247 |
ccac |
250 |
Q |
| |
|
|||| |
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|
| T |
19970463 |
ccac |
19970460 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 71 - 158
Target Start/End: Original strand, 9617368 - 9617455
Alignment:
| Q |
71 |
taactcacattatctcttttctcccattcaaagacgctttcagaactaccattctttctaagagatggttcccattattccacacact |
158 |
Q |
| |
|
||||||||||| |||||||||||||| ||||| ||||||||||||||| | |||| || || || ||| ||||||||| |||| |||| |
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| T |
9617368 |
taactcacattctctcttttctcccactcaaatacgctttcagaactatcgttctctcgaaaaggtgggtcccattatcccactcact |
9617455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 47 - 158
Target Start/End: Original strand, 17376423 - 17376534
Alignment:
| Q |
47 |
tcaatgacttaccagacgagatactaactcacattatctcttttctcccattcaaagacgctttcagaactaccattctttctaagagatggttcccatt |
146 |
Q |
| |
|
|||| ||||| || ||||||||||||||||| ||| ||||||| || |||| ||||||||||| ||| ||| ||||||| || |||||| || |||| |
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|
| T |
17376423 |
tcaacgacttccccgacgagatactaactcatattctctctttacttccatgtaaagacgcttttagatttacagttctttcgaaaagatggatctcatt |
17376522 |
T |
|
| Q |
147 |
attccacacact |
158 |
Q |
| |
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|| |||| |||| |
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| T |
17376523 |
atgccactcact |
17376534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 67 - 116
Target Start/End: Original strand, 17382821 - 17382870
Alignment:
| Q |
67 |
atactaactcacattatctcttttctcccattcaaagacgctttcagaac |
116 |
Q |
| |
|
||||||||||||||| |||||||||| |||| |||| ||||||| ||||| |
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|
| T |
17382821 |
atactaactcacattctctcttttcttccatgcaaacacgcttttagaac |
17382870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 46; Significance: 5e-17; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 47 - 148
Target Start/End: Complemental strand, 16259666 - 16259565
Alignment:
| Q |
47 |
tcaatgacttaccagacgagatactaactcacattatctcttttctcccattcaaagacgctttcagaactaccattctttctaagagatggttcccatt |
146 |
Q |
| |
|
|||| ||||| | |||||| ||||||| || ||| |||||||||| ||| ||||||||||||||||||||||||||||||| ||||| ||| || |||| |
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|
| T |
16259666 |
tcaacgacttccaagacgacatactaagccaaattctctcttttcttccaatcaaagacgctttcagaactaccattctttcgaagaggtgggtctcatt |
16259567 |
T |
|
| Q |
147 |
at |
148 |
Q |
| |
|
|| |
|
|
| T |
16259566 |
at |
16259565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 60 - 148
Target Start/End: Complemental strand, 16229344 - 16229256
Alignment:
| Q |
60 |
agacgagatactaactcacattatctcttttctcccattcaaagacgctttcagaactaccattctttctaagagatggttcccattat |
148 |
Q |
| |
|
|||||| ||| ||| ||| ||| |||||||||| ||| ||||||| ||||||||||||||||||||||| ||||| ||| || |||||| |
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|
| T |
16229344 |
agacgacatagtaagtcaaattctctcttttcttccaatcaaagaggctttcagaactaccattctttcgaagaggtgggtctcattat |
16229256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 47 - 147
Target Start/End: Complemental strand, 32243261 - 32243161
Alignment:
| Q |
47 |
tcaatgacttaccagacgagatactaactcacattatctcttttctcccattcaaagacgctttcagaactaccattctttctaagagatggttcccatt |
146 |
Q |
| |
|
||||||| || | |||||| | ||||| || |||| ||| |||||| ||| ||||||||||||||||||||||||||||||| ||||| ||| ||||||| |
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|
| T |
32243261 |
tcaatgaattccaagacgacaaactaagtctcattctcttttttcttccagtcaaagacgctttcagaactaccattctttcgaagaggtgggtcccatt |
32243162 |
T |
|
| Q |
147 |
a |
147 |
Q |
| |
|
| |
|
|
| T |
32243161 |
a |
32243161 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 61 - 232
Target Start/End: Original strand, 15783689 - 15783860
Alignment:
| Q |
61 |
gacgagatactaactcacattatctcttttctcccattcaaagacgctttcagaactaccattctttctaagagatggttcccattattccacacacttc |
160 |
Q |
| |
|
||||| ||||||||||| || ||||||||||| || ||||||| |||||||| || ||| ||||||| ||||||||| | | ||| | || | |||| | |
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|
| T |
15783689 |
gacgatatactaactcatataatctcttttctaccgatcaaagatgctttcaggacaacccttctttcaaagagatgggttctattgtgccgctcactcc |
15783788 |
T |
|
| Q |
161 |
ccattccccacatcgacgacaaagaagtgaaaaacggaaaggattggattcactttcgtcaaatgttggatg |
232 |
Q |
| |
|
|| ||| ||||||| |||| | | |||||||| | |||||| | |||||| || |||||||||||||||| |
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|
| T |
15783789 |
ccgttctccacatcaacgatgatggcgtgaaaaatgaaaaggacttgattcagttccgtcaaatgttggatg |
15783860 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: scaffold0009
Description:
Target: scaffold0009; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 83 - 141
Target Start/End: Original strand, 39751 - 39809
Alignment:
| Q |
83 |
tctcttttctcccattcaaagacgctttcagaactaccattctttctaagagatggttc |
141 |
Q |
| |
|
|||||||||| || ||||| ||||||||||||||||||||||||| ||||| |||||| |
|
|
| T |
39751 |
tctcttttcttccgatcaaatacgctttcagaactaccattctttccaagaggtggttc |
39809 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 77 - 144
Target Start/End: Original strand, 21471 - 21538
Alignment:
| Q |
77 |
acattatctcttttctcccattcaaagacgctttcagaactaccattctttctaagagatggttccca |
144 |
Q |
| |
|
||||| |||||||||| || ||||| | ||||||||||||||| ||||||| ||| ||||||||||| |
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|
| T |
21471 |
acattctctcttttcttccgatcaaatatgctttcagaactaccgttctttccaagcgatggttccca |
21538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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