View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18453_high_18 (Length: 453)
Name: NF18453_high_18
Description: NF18453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18453_high_18 |
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Alignment Details
Target: chr7 (Bit Score: 410; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 1 - 437
Target Start/End: Original strand, 46018464 - 46018897
Alignment:
| Q |
1 |
cttgatcttgaccaccatattgtgcagtttgtacacttgatgatgtctccaccaaaccatgaattgttgtatcaattcgcaatggttttagatcattcaa |
100 |
Q |
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| T |
46018464 |
cttgatcttgaccaccatattgtgcagtttgtacacttgatgatgtctccaccaaaccatgaattgttgtatcaattggcaatggttttagatcattcaa |
46018563 |
T |
|
| Q |
101 |
atttttgtaagcatgttgcttaacttcttctaccaaatgctgccaatgacagaagtgttttgctgatatcaggttaagaggtactagtactatatataca |
200 |
Q |
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| T |
46018564 |
atttttgtaagcatgttgcttaacttcttctaccaaacgctgccaatgacagaagtgttttgctgatatcaggttaagaggtactagtactatata--ca |
46018661 |
T |
|
| Q |
201 |
caattatattctggtaaagatataaatcactttaatttaagaatccatataaagttcactccaaatattcacagccaaagggagtaggatacaaatacaa |
300 |
Q |
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| T |
46018662 |
caattatattctggtaa-gatataaatcactttaatttaagaatccatataaagttcactccaaatattcacagccaaagggagtaggatacaaatacaa |
46018760 |
T |
|
| Q |
301 |
accttttcctgcggattgagagattgtatagaacgagagttttgttgattatgaaaagtcacctccacaacctttaaaattgaattaaagacaagggagg |
400 |
Q |
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| T |
46018761 |
accttttcctgcggattgagagattgtatagaacgagagttttgttgattatgaaaagtcacctccacaacctttaaaattgaattaaagacaagggagg |
46018860 |
T |
|
| Q |
401 |
atattggttgttctgttacataatagatgtagcaccc |
437 |
Q |
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| T |
46018861 |
atattggttgttctgttacataatagatgtagcaccc |
46018897 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 1 - 433
Target Start/End: Original strand, 46031097 - 46031534
Alignment:
| Q |
1 |
cttgatcttgaccaccatattgtgcagtttgtacacttgatgatgtctccaccaaaccatgaattgttgtatcaattcgcaatggttttagatcattcaa |
100 |
Q |
| |
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||||||||||||| ||||||||||| ||||||||| || |||||||| |||| ||| | |||||||||||||| ||||||| || |||||| || |
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| T |
46031097 |
cttgatcttgaccgtcatattgtgcattttgtacacctgtcaatgtctcctccaatccaagtgttgttgtatcaattggcaatggattccaatcattgaa |
46031196 |
T |
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| Q |
101 |
atttttgtaagcatgttgcttaacttcttctaccaaatgctgccaatgacagaagtgttttgctgatatcaggttaagaggtactagtactatatataca |
200 |
Q |
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| T |
46031197 |
atatttgtaagcatgttgcttaactctttccaccaaccgctgtcaatgacacaagtgttttgatcatat------aagagatatgagtactata----ca |
46031286 |
T |
|
| Q |
201 |
caattatattctggtaaagatataaatcactttaatttaagaatccatataaagttcactccaaatattcacagccaaagggag---------------- |
284 |
Q |
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| T |
46031287 |
caactatattttggtaa-gatatgaatcacta-aatttaagaatccatataaggtccactccgaatattcacagccaaagggatctaccgacattatgat |
46031384 |
T |
|
| Q |
285 |
-taggatacaaatacaaaccttttcctgcggattgagagattgtatagaacgagagttttgttgattatgaaaagtcacctccacaacctttaaaattga |
383 |
Q |
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|||||| |||| |||||||||||| ||| | || |||||||| |||||||||| |||||||| ||||||||||||||||||||||||||| |||||| |
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| T |
46031385 |
ataggatgcaaacacaaaccttttcttgctggtttagagattgaatagaacgagcgttttgttcattatgaaaagtcacctccacaaccttataaattgc |
46031484 |
T |
|
| Q |
384 |
attaaagacaagggaggatattggttgttctgttacataatagatgtagc |
433 |
Q |
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||||||||||||| | |||||||||||||| ||| ||||||||||||| |
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| T |
46031485 |
attaaagacaaggaacgatattggttgttcagttgagtaatagatgtagc |
46031534 |
T |
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