View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18453_high_19 (Length: 452)
Name: NF18453_high_19
Description: NF18453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18453_high_19 |
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Alignment Details
Target: chr4 (Bit Score: 433; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 433; E-Value: 0
Query Start/End: Original strand, 1 - 441
Target Start/End: Complemental strand, 2646758 - 2646318
Alignment:
| Q |
1 |
cctaccacttcccactcccttcccatgcttctaaccaattttaaagttttgaagaaagaataatgatcctatatgcactttgcatccattatcataccaa |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
2646758 |
cctaccacttcccactcccttcccatgcttctaaccaattttaaagttttgaagaaagaataatgatcctatatgcactttgcgtccattatcataccaa |
2646659 |
T |
|
| Q |
101 |
taaattttaacaaaatgaagttgtagcccactgccaaagtaaatgttcaaaattcaaagtaacctctctttggaattgaagcacgaatttcctttatctc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2646658 |
taaattttaacaaaatgaagttgtagcccactgccaaagtaaatgttcaaaattcaaagtaacctctctttggaattgaagcacgaatttcctttatctc |
2646559 |
T |
|
| Q |
201 |
tttttctctcctttaaattttattgattccatttatcaaggttgtcacttaaacagcactaaaaagtactacaatattctcttttccctccatttatcct |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2646558 |
tttttctctcctttaaattttattgattccatttatcaaggttgtcacttaaacaacactaaaaagtactacaatattctcttttccctccatttatcct |
2646459 |
T |
|
| Q |
301 |
cttttttatgtggtgtcttctagtatataaaccatgcctattgtcacatttcttcatcaatctctccctctttcagcttctctatctataatagttcaag |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2646458 |
cttttttatgtggtgtcttctagtatataaaccatgcctattgtcacatttcttcatcaatctctccctctttcagcttctctatctataatagttcaag |
2646359 |
T |
|
| Q |
401 |
ttactttattatcttgaggttagtctttgtgtgttcatttc |
441 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2646358 |
ttactttattatcttgaggttagtctttgtgtgttcatttc |
2646318 |
T |
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