View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18453_high_2 (Length: 986)

Name: NF18453_high_2
Description: NF18453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18453_high_2
NF18453_high_2
[»] chr6 (3 HSPs)
chr6 (658-970)||(28896505-28896817)
chr6 (164-414)||(28896822-28897061)
chr6 (13-127)||(28897102-28897216)


Alignment Details
Target: chr6 (Bit Score: 281; Significance: 1e-157; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 658 - 970
Target Start/End: Complemental strand, 28896817 - 28896505
Alignment:
Q  658 cttaaagatgcaactgttgtccaatagcatcaggctttactcacaggttcaccaagacaagaactacaaaatctgctacctatttctagcttaagatccg 757  Q
    ||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28896817 cttaaagatgcaactcttgtccaatagcatcaggctttactcccaggttcaccaagacaagaactacaaaatctgctacctatttctagcttaagatccg 28896718  T
Q  758 tcctgccccactatagaaccctgcctacctgcaacgccaaaagttgcagcgctagccttgattttaagatcaacacaaggcaaatcttgtcgcgagagac 857  Q
    ||| ||||| | ||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  28896717 tcccgcccctccatagaaccctgcccacctgcaacgccaaaacttgcagcgctagccttgattttaagatcaacacaaggcaaatcttgtcgcgacagac 28896618  T
Q  858 taaggcaagccattggattcaggcaccattgtgatatgttataatcaaggttattcgatttaatactcaaccaattccaagaggacaagttcgcctcctc 957  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28896617 taaggcaagccattggattcaggcaccattgtgatatgttataatcaaggttattcgatttaatactcaaccaattccaagaggacaagttcgcctcctc 28896518  T
Q  958 aactatcttatct 970  Q
    |||||||||||||    
T  28896517 aactatcttatct 28896505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 175; E-Value: 1e-93
Query Start/End: Original strand, 164 - 414
Target Start/End: Complemental strand, 28897061 - 28896822
Alignment:
Q  164 gatcgacattgacactaaagaaattgcagaatcattaaaagtacc-atgagtggacatgaagaatgagagattgaagaggcgcatgccctagctgatatt 262  Q
    |||||||| ||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| | ||||||||||||||||    
T  28897061 gatcgacaatgacaataaagaaattgcagaatcattaaaagtaccgatgagtggacatgaagaatgagagattgaagaggcacgtgccctagctgatatt 28896962  T
Q  263 tggagaaaaatttggagcacttgtaattgagagggatttgattccaagaaaataatgttcaaaccgagaatatatattttgatggcatatgcaggataat 362  Q
    |||||            |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  28896961 tggag------------cacttgtaattgagagagatttgattccaagaaaataatgttcaaaccgagaatatatattttgatggcatatgcaggagaat 28896874  T
Q  363 aacttttttatctctataggtgatagttaaattctctttactatcccctaaa 414  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  28896873 aacttttttatctctataggtgatagttaaattctctttattatcccctaaa 28896822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 111; E-Value: 2e-55
Query Start/End: Original strand, 13 - 127
Target Start/End: Complemental strand, 28897216 - 28897102
Alignment:
Q  13 cacagatacaaaatcattatgacgattatgataataatgataaaataaataacgaaatcgcaaaaaatcatatttatcgttgcagaattacaaagcaagc 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  28897216 cacagatacaaaatcattatgacgattatgataataatgataaaataaataacgaaatcgcaaaaattcatatttatcgttgcagaattacaaagcaagc 28897117  T
Q  113 atggggaaacacaca 127  Q
    |||||||||||||||    
T  28897116 atggggaaacacaca 28897102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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