View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18453_high_21 (Length: 436)
Name: NF18453_high_21
Description: NF18453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18453_high_21 |
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Alignment Details
Target: chr7 (Bit Score: 155; Significance: 4e-82; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 201 - 419
Target Start/End: Original strand, 44999751 - 44999957
Alignment:
| Q |
201 |
aggaagctcattaggaaagttaattatcattactctttgatcaatttatagtatattctaagcatagttttaaattgtggtcaacaacgtcgtaactcaa |
300 |
Q |
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| T |
44999751 |
aggaagctcattaggaaagttaattatcattactctttgatcaatttatagtatattctaagcatagttttaaattgtggtcaacaacgtcgtaactcaa |
44999850 |
T |
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| Q |
301 |
tttaaaaccaacnnnnnnngcatgaaaaatatcatatacctgaaaatatcccaagctgtagttaaatcaggatcagatggtggaaattgatctttagcta |
400 |
Q |
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|||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44999851 |
tttaaaaccaacttttt------------ttacatatacctgaaaatatcccaagctgtagttaaatcaggatcagatggtggaaattgatctttagcta |
44999938 |
T |
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| Q |
401 |
gaaggttgcgatatactgg |
419 |
Q |
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| T |
44999939 |
gaaggttgcgatatactgg |
44999957 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 20 - 161
Target Start/End: Original strand, 44999581 - 44999716
Alignment:
| Q |
20 |
aacacaaaataaaatggactgactgtcatcataaaaatacctttccatcaacaaattcacgccatcccaacatacggttttgaggatactttttggctgc |
119 |
Q |
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| T |
44999581 |
aacacaaaataaaatggactgtctgtcat---aaaaatacctttccatcaacaaattcacgccatcccaacatacggttttgaggatactttttggctgc |
44999677 |
T |
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| Q |
120 |
cacactacaatcatatcatatcataatagaaagggtcaattt |
161 |
Q |
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| T |
44999678 |
cacactacaatcatatcatatc---atagaaagggtcaattt |
44999716 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 58 - 106
Target Start/End: Complemental strand, 38764223 - 38764175
Alignment:
| Q |
58 |
acctttccatcaacaaattcacgccatcccaacatacggttttgaggat |
106 |
Q |
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|||||||||||||||| || ||||||||| | ||| ||||||||||||| |
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| T |
38764223 |
acctttccatcaacaattttacgccatccaagcatgcggttttgaggat |
38764175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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