View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18453_high_39 (Length: 354)

Name: NF18453_high_39
Description: NF18453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18453_high_39
NF18453_high_39
[»] chr2 (16 HSPs)
chr2 (1-340)||(15020351-15020690)
chr2 (102-340)||(31969776-31970014)
chr2 (18-339)||(15013857-15014175)
chr2 (1-340)||(15003248-15003585)
chr2 (89-340)||(14567999-14568250)
chr2 (18-340)||(15024386-15024701)
chr2 (163-340)||(14849864-14850041)
chr2 (191-340)||(14520764-14520913)
chr2 (136-334)||(15008455-15008653)
chr2 (164-340)||(14543609-14543785)
chr2 (171-340)||(14512933-14513103)
chr2 (163-340)||(14534608-14534785)
chr2 (163-340)||(14547750-14547921)
chr2 (203-336)||(14552964-14553097)
chr2 (1-97)||(15008659-15008756)
chr2 (127-207)||(14847124-14847204)


Alignment Details
Target: chr2 (Bit Score: 308; Significance: 1e-173; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 1 - 340
Target Start/End: Complemental strand, 15020690 - 15020351
Alignment:
1 gatgataacaaacccagcagtagttcaaattagcacatgaaacactccaacagtactaaccacttatcctgtcctagaaagtataagtactacaaatcaa 100  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
15020690 gatgataacaaacccaacagtagttcaaattagcacatgaaacactccaacagtactaaccacttatcctgtcctagaaagtataactactacaaatcaa 15020591  T
101 agaaggaataagctaaggatagattacaaaagaagaagatcaatacattacacatttggtggatggcatcccattgttctccgttgcatttgcaagtttc 200  Q
    ||||||||||||||||||||  |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
15020590 agaaggaataagctaaggatgtattacaaaagaagaagatcaatgcattacacatttggtggatggcatcccattgttctccgttgcatttgcaagtttc 15020491  T
201 attttttcgttatatagcttcaacagataatcagactcctccttaaagctgaaaacatacttggtcaagaagatatcgtcggaataagcaaatggcttaa 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||  |||    
15020490 attttttcgttatatagcttcaacagataatcagactcctccttaaagctgaaaacatacttgttcaagaagatatcgtcggaataagcaaatggtctaa 15020391  T
301 ctaagctcgccttcttctttcgcaaacctttcatcaaaag 340  Q
    ||||||||||||||||||||||||||||||||||||||||    
15020390 ctaagctcgccttcttctttcgcaaacctttcatcaaaag 15020351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 102 - 340
Target Start/End: Complemental strand, 31970014 - 31969776
Alignment:
102 gaaggaataagctaaggatagattacaaaagaagaagatcaatacattacacatttggtggatggcatcccattgttctccgttgcatttgcaagtttca 201  Q
    |||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
31970014 gaaggaataagctaaggatgtattacaaaagaagaagatcaatacattacacatttggtggatggcatcccattgttctccattgcatttgcaagtttca 31969915  T
202 ttttttcgttatatagcttcaacagataatcagactcctccttaaagctgaaaacatacttggtcaagaagatatcgtcggaataagcaaatggcttaac 301  Q
    ||||||||| |||||||||||| |||||||||||||||||||||||||||||||||  |||| ||||||| ||||| |||||||||||||||||  ||||    
31969914 ttttttcgtaatatagcttcaaaagataatcagactcctccttaaagctgaaaacacgcttgttcaagaacatatcctcggaataagcaaatggtctaac 31969815  T
302 taagctcgccttcttctttcgcaaacctttcatcaaaag 340  Q
    |||||||||||||||||||||||||||||||||||||||    
31969814 taagctcgccttcttctttcgcaaacctttcatcaaaag 31969776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 18 - 339
Target Start/End: Complemental strand, 15014175 - 15013857
Alignment:
18 cagtagttcaaattagcacatgaaacactccaacagtactaaccacttatcctgtcctagaaagtataagtactacaaatcaaagaaggaataagctaag 117  Q
    |||||||||||||||| | ||||||||  |||||| ||| |||| ||||||||| ||||||||| |||||||||  ||||||||||||||| ||| ||||    
15014175 cagtagttcaaattagtaaatgaaacaagccaacaataccaaccccttatcctggcctagaaagaataagtacttgaaatcaaagaaggaacaagataag 15014076  T
118 gatagattacaaaagaagaagatcaatacattacacatttggtggatggcatcccattgttctccgttgcatttgcaagtttcattttttcgttatatag 217  Q
    | || ||||||||||||||   |||| |  ||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||    
15014075 gttatattacaaaagaaga---tcaaaatcttatacatttggtggatggcatcccattgttctccgttgtatttgcaagtttcattttttcgtcatatag 15013979  T
218 cttcaacagataatcagactcctccttaaagctgaaaacatacttggtcaagaagatatcgtcggaataagcaaatggcttaactaagctcgccttcttc 317  Q
    |||||||||||||||||||||||||||||||||||||||| ||||| ||||||| ||||  || ||||||| ||||||  || |||||||||| || ||     
15013978 cttcaacagataatcagactcctccttaaagctgaaaacacacttgttcaagaacatattctcagaataagaaaatggtctacctaagctcgcatttttt 15013879  T
318 tttcgcaaacctttcatcaaaa 339  Q
    || |||||||||||||||||||    
15013878 ttccgcaaacctttcatcaaaa 15013857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 1 - 340
Target Start/End: Original strand, 15003248 - 15003585
Alignment:
1 gatgataacaaacccagcagtagttcaaattagcacatgaaacactccaacagtactaaccacttatcctgtcctagaaagta-taagtactacaaatca 99  Q
    ||||| |||||| ||| |||||||||||||||||| |||||||| || |||| |||||||   ||||| |     |||||| | |||||||| ||||| |    
15003248 gatgagaacaaaaccaacagtagttcaaattagcagatgaaacaatctaacaatactaacacgttatcgt-----agaaagaaataagtacttcaaataa 15003342  T
100 aagaaggaataagct-aaggatagattacaaaa-gaagaagatcaatacattacacatttggtggatggcatcccattgttctccgttgcatttgcaagt 197  Q
    ||||||||| ||||| |||| || ||||||||| |||||||||||||| ||||||||||||||||||||||| ||| |||||||  ||| ||||||||||    
15003343 aagaaggaacaagcttaaggttaaattacaaaaagaagaagatcaataaattacacatttggtggatggcatgccaatgttctcttttgtatttgcaagt 15003442  T
198 ttcattttttcgttatatagcttcaacagataatcagactcctccttaaagctgaaaacatacttggtcaagaagatatcgtcggaataagcaaatggct 297  Q
    ||||||||||| | ||||||||| || ||||||||||||||||||||||||||||||||| ||||| ||||||| | ||  || ||||||| ||| ||      
15003443 ttcattttttcctcatatagctttaatagataatcagactcctccttaaagctgaaaacacacttgttcaagaataaattctcagaataagtaaacggtg 15003542  T
298 taactaagctcgccttcttctttcgcaaacctttcatcaaaag 340  Q
     |||||||||||| || || | ||||||||||||||| |||||    
15003543 aaactaagctcgcatttttttctcgcaaacctttcataaaaag 15003585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 89 - 340
Target Start/End: Complemental strand, 14568250 - 14567999
Alignment:
89 actacaaatcaaagaaggaataagctaaggatagattacaaaagaagaagatcaatacattacacatttggtggatggcatcccattgttctccgttgca 188  Q
    |||| ||||||||||||||| ||| ||||| || || ||||||||||||||| | || |||||||||||||||||  |||| |||||||||||| |||      
14568250 actaaaaatcaaagaaggaacaagttaaggttaaatcacaaaagaagaagattactaaattacacatttggtggacagcatgccattgttctcctttgtg 14568151  T
189 tttgcaagtttcattttttcgttatatagcttcaacagataatcagactcctccttaaagctgaaaacatacttggtcaagaagatatcgtcggaataag 288  Q
    |||||||||||   |||||| | ||||||||| || |||||||||||||| |||||||||||||||||| ||||| ||||||| || |  || |||||||    
14568150 tttgcaagtttgcctttttcctcatatagctttaatagataatcagactcttccttaaagctgaaaacaaacttgctcaagaacattttctcagaataag 14568051  T
289 caaatggcttaactaagctcgccttcttctttcgcaaacctttcatcaaaag 340  Q
    |||||||  || ||||||| || ||||| |||||||||||||||||||||||    
14568050 caaatggtgtacctaagcttgcattcttttttcgcaaacctttcatcaaaag 14567999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 18 - 340
Target Start/End: Complemental strand, 15024701 - 15024386
Alignment:
18 cagtagttcaaattagcacatgaaacactccaacagtactaaccacttatcctgtcctagaaagtataagtactacaaatcaaagaaggaataagctaag 117  Q
    ||||| |||||||||| | ||||||||  |||||| ||| |||| ||||||||| ||||||||| ||| ||||| |||||||||||||||| ||| ||||    
15024701 cagtatttcaaattagtaaatgaaacaagccaacaataccaaccccttatcctggcctagaaagaata-gtacttcaaatcaaagaaggaacaagataag 15024603  T
118 gatagattacaaaagaagaagatcaatacattacacatttggtggatggcatcccattgttctccgttgcatttgcaagtttcattttttcgttatatag 217  Q
    | || |||||||||||| | ||   | |  |||||||||||||||||||||| ||| ||||||   ||| |||||||| |||||||||||| | ||  ||    
15024602 gttatattacaaaagaaaatga---aaatcttacacatttggtggatggcatgccaatgttct---ttgtatttgcaaatttcattttttcctcatgcag 15024509  T
218 cttcaacagataatcagactcctccttaaagctgaaaacatacttggtcaagaagatatcgtcggaataagcaaatggcttaactaagctcgccttcttc 317  Q
    ||| || ||||||||||||||||||||||||||||||||| ||||| |||||||   ||  || ||| | | ||||||  |||||||||| || |||||     
15024508 ctttaagagataatcagactcctccttaaagctgaaaacaaacttgttcaagaacgaattctcagaacatgtaaatggtgtaactaagcttgcattcttt 15024409  T
318 tttcgcaaacctttcatcaaaag 340  Q
    | |||||||||||| ||||||||    
15024408 tgtcgcaaaccttttatcaaaag 15024386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 163 - 340
Target Start/End: Original strand, 14849864 - 14850041
Alignment:
163 atggcatcccattgttctccgttgcatttgcaagtttcattttttcgttatatagcttcaacagataatcagactcctccttaaagctgaaaacatactt 262  Q
    ||||||| |||||||||||| |||  | |||||||||||||||||| | ||||||||| || |||||||||||||||||| |||| ||||||||| ||||    
14849864 atggcatgccattgttctcctttgtgtatgcaagtttcattttttcctcatatagctttaatagataatcagactcctccataaatctgaaaacaaactt 14849963  T
263 ggtcaagaagatatcgtcggaataagcaaatggcttaactaagctcgccttcttctttcgcaaacctttcatcaaaag 340  Q
    | ||||||| ||||  || ||||||||||||||  ||||||||||||| ||||| |||||||||||||||||||||||    
14849964 gctcaagaacatattctcagaataagcaaatggtgtaactaagctcgcattcttttttcgcaaacctttcatcaaaag 14850041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 191 - 340
Target Start/End: Complemental strand, 14520913 - 14520764
Alignment:
191 tgcaagtttcattttttcgttatatagcttcaacagataatcagactcctccttaaagctgaaaacatacttggtcaagaagatatcgtcggaataagca 290  Q
    ||||| |||||||||||| | ||||||||| || |||||||||||||||||||||||||  |||||| ||||| ||||||| |  |  |||||||||| |    
14520913 tgcaaatttcattttttcctcatatagctttaatagataatcagactcctccttaaagcataaaacacacttgctcaagaacaatttctcggaataagta 14520814  T
291 aatggcttaactaagctcgccttcttctttcgcaaacctttcatcaaaag 340  Q
    |||||  |||||||||| || ||||| |||||||||||||||||||||||    
14520813 aatggtgtaactaagcttgcattcttttttcgcaaacctttcatcaaaag 14520764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 136 - 334
Target Start/End: Complemental strand, 15008653 - 15008455
Alignment:
136 aagatcaatacattacacatttggtggatggcatcccattgttctccgttgcatttgcaagtttcattttttcgttatatagcttcaacagataatcaga 235  Q
    |||||||| | ||||||||||||| ||  ||||| | | |||||||  ||| |||||||||||||  |||||| ||||||||||| || |||||||||||    
15008653 aagatcaacaaattacacatttggaggtaggcatgctagtgttctcttttgtatttgcaagtttctgtttttcattatatagctttaatagataatcaga 15008554  T
236 ctcctccttaaagctgaaaacatacttggtcaagaagatatcgtcggaataagcaaatggcttaactaagctcgccttcttctttcgcaaacctttcat 334  Q
    |||||||| ||||||||||||| ||||| ||||||| |  |  || ||||||| ||||||   ||||||||| || ||||| | |||||||||||||||    
15008553 ctcctcctcaaagctgaaaacaaacttgttcaagaacagcttctcagaataagtaaatggtgcaactaagcttgcattcttttctcgcaaacctttcat 15008455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 164 - 340
Target Start/End: Complemental strand, 14543785 - 14543609
Alignment:
164 tggcatcccattgttctccgttgcatttgcaagtttcattttttcgttatatagcttcaacagataatcagactcctccttaaagctgaaaacatacttg 263  Q
    |||||| |||||||||||  |||  | ||||||||||| |||||| | ||||| ||| || ||||||||||||||||||||||||||||||||| |||||    
14543785 tggcatgccattgttctcttttgtgtatgcaagtttcactttttcctcatataactttaatagataatcagactcctccttaaagctgaaaacaaacttg 14543686  T
264 gtcaagaagatatcgtcggaataagcaaatggcttaactaagctcgccttcttctttcgcaaacctttcatcaaaag 340  Q
     ||||||| || |   | |||||| |||||||   ||||||||| || ||||| | ||||||||||||||| |||||    
14543685 ctcaagaacattttcccagaataaccaaatggtgcaactaagcttgcattcttttctcgcaaacctttcattaaaag 14543609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 171 - 340
Target Start/End: Complemental strand, 14513103 - 14512933
Alignment:
171 ccattgttctccgttgcatttgcaagtttcattttttcgtt-atatagcttcaacagataatcagactcctccttaaagctgaaaacatacttggtcaag 269  Q
    |||||||| ||| |||| | ||||| ||||||||||||  | ||||||||| || ||||||||||||||||||||||| ||||||||| ||||| |||||    
14513103 ccattgttttccattgcgtatgcaattttcattttttctctcatatagctttaatagataatcagactcctccttaaatctgaaaacaaacttgctcaag 14513004  T
270 aagatatcgtcggaataagcaaatggcttaactaagctcgccttcttctttcgcaaacctttcatcaaaag 340  Q
    || |  |  || ||||||| ||||||  ||  |||||| || ||||| |||||||||||||||||||||||    
14513003 aacaatttctcagaataagtaaatggtgtagttaagcttgcattcttttttcgcaaacctttcatcaaaag 14512933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 163 - 340
Target Start/End: Complemental strand, 14534785 - 14534608
Alignment:
163 atggcatcccattgttctccgttgcatttgcaagtttcattttttcgttatatagcttcaacagataatcagactcctccttaaagctgaaaacatactt 262  Q
    ||||||| |||||||| ||| ||| || ||||||||| |||||||| | ||||| ||| || ||||||||||||||||||||||||||||||||| ||||    
14534785 atggcatgccattgttttccattgtatatgcaagttttattttttcctcatatatctttaatagataatcagactcctccttaaagctgaaaacaaactt 14534686  T
263 ggtcaagaagatatcgtcggaataagcaaatggcttaactaagctcgccttcttctttcgcaaacctttcatcaaaag 340  Q
       ||| || |  |  || |||||   ||||||  |||||||||| || ||||| |||||||| ||||||||||||||    
14534685 ctccaaaaacaatttttcagaatatctaaatggtgtaactaagctggcattcttttttcgcaagcctttcatcaaaag 14534608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 163 - 340
Target Start/End: Complemental strand, 14547921 - 14547750
Alignment:
163 atggcatcccattgttctccgttgcatttgcaagtttcattttttcgttatatagcttcaacagataatcagactcctccttaaagctgaaaacatactt 262  Q
    ||||||| |||||||||||| |||  | |||| |||||||||||||   ||||||||| || ||||||||| |||||||||      |||| ||| ||||    
14547921 atggcatgccattgttctcctttgtgtatgcaggtttcattttttccacatatagctttaatagataatcacactcctcct------tgaagacaaactt 14547828  T
263 ggtcaagaagatatcgtcggaataagcaaatggcttaactaagctcgccttcttctttcgcaaacctttcatcaaaag 340  Q
    | |||||||||  |  |||||||||| ||||||  ||||||||||  | ||||| | | |||||||||||||||||||    
14547827 gctcaagaagaatttctcggaataagtaaatggtgtaactaagctttcattcttatcttgcaaacctttcatcaaaag 14547750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 203 - 336
Target Start/End: Complemental strand, 14553097 - 14552964
Alignment:
203 tttttcgttatatagcttcaacagataatcagactcctccttaaagctgaaaacatacttggtcaagaagatatcgtcggaataagcaaatggcttaact 302  Q
    |||||| | ||| ||||| || |||||||||||||| ||||||||||| |||||| ||||| ||||||| || |   | |||||| |||||||   ||||    
14553097 tttttcttcatacagctttaatagataatcagactcttccttaaagctaaaaacaaacttgctcaagaacattttcccagaataatcaaatggtgcaact 14552998  T
303 aagctcgccttcttctttcgcaaacctttcatca 336  Q
    ||||| || ||||| || | ||||||||||||||    
14552997 aagcttgcattctttttcctcaaacctttcatca 14552964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 15008756 - 15008659
Alignment:
1 gatgataacaaac-ccagcagtagttcaaattagcacatgaaacactccaacagtactaaccacttatcctgtcctagaaagtataagtactacaaat 97  Q
    ||||||||||||  ||| |||||||||||| ||||| ||||||||  | |||| |||||| | ||||||||| ||||||||| |||| |||| |||||    
15008756 gatgataacaaaagccaacagtagttcaaaatagcaaatgaaacaagctaacaatactaaacccttatcctgacctagaaagcataattacttcaaat 15008659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 127 - 207
Target Start/End: Original strand, 14847124 - 14847204
Alignment:
127 caaaagaagaagatcaatacattacacatttggtggatggcatcccattgttctccgttgcatttgcaagtttcatttttt 207  Q
    |||||||||||||| || |  ||||||||||||| || || || || ||||||||| ||| |||||||| |||||||||||    
14847124 caaaagaagaagattaacaagttacacatttggtagaagggatgccgttgttctcctttgtatttgcaaatttcatttttt 14847204  T

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