View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18453_high_4 (Length: 742)

Name: NF18453_high_4
Description: NF18453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18453_high_4
NF18453_high_4
[»] chr5 (2 HSPs)
chr5 (541-613)||(8254785-8254857)
chr5 (541-613)||(37442516-37442588)
[»] chr6 (3 HSPs)
chr6 (544-613)||(33699402-33699471)
chr6 (544-593)||(12341774-12341823)
chr6 (544-613)||(28992377-28992446)
[»] chr4 (3 HSPs)
chr4 (568-613)||(42096783-42096828)
chr4 (614-652)||(42096721-42096759)
chr4 (547-612)||(24254639-24254704)
[»] chr3 (3 HSPs)
chr3 (575-613)||(54788194-54788232)
chr3 (538-596)||(27788848-27788906)
chr3 (568-613)||(7238909-7238954)
[»] chr1 (3 HSPs)
chr1 (551-613)||(31847645-31847707)
chr1 (548-613)||(622857-622922)
chr1 (647-680)||(27541289-27541322)
[»] chr2 (3 HSPs)
chr2 (544-613)||(8514007-8514076)
chr2 (551-602)||(22296866-22296917)
chr2 (546-593)||(32016360-32016407)
[»] chr7 (1 HSPs)
chr7 (543-585)||(31195639-31195681)
[»] chr8 (1 HSPs)
chr8 (544-613)||(5995184-5995253)


Alignment Details
Target: chr5 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 541 - 613
Target Start/End: Complemental strand, 8254857 - 8254785
Alignment:
Q  541 tctcatctgtttttactcattttcgttcaacgagagttaactcacgttgaaaaatgcacctatgtgagttaac 613  Q
    |||||| ||||||| |||  |||||||||||| ||||||||||||| |||||||||||  |||||||||||||    
T  8254857 tctcatatgtttttgctctatttcgttcaacgtgagttaactcacgctgaaaaatgcatatatgtgagttaac 8254785  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 541 - 613
Target Start/End: Original strand, 37442516 - 37442588
Alignment:
Q  541 tctcatctgtttttactcattttcgttcaacgagagttaactcacgttgaaaaatgcacctatgtgagttaac 613  Q
    |||||||||||||| ||||||  ||| | ||  ||||||||||||| |||||||| |||||| ||||||||||    
T  37442516 tctcatctgtttttgctcattcccgtcctacatgagttaactcacgctgaaaaatacacctacgtgagttaac 37442588  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000004; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 544 - 613
Target Start/End: Complemental strand, 33699471 - 33699402
Alignment:
Q  544 catctgtttttactcattttcgttcaacgagagttaactcacgttgaaaaatgcacctatgtgagttaac 613  Q
    ||||||||||| |||||| |||| |||||  |||||||| |||||||||||| |||||| ||||||||||    
T  33699471 catctgtttttgctcattctcgtccaacgcaagttaacttacgttgaaaaattcacctacgtgagttaac 33699402  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 544 - 593
Target Start/End: Complemental strand, 12341823 - 12341774
Alignment:
Q  544 catctgtttttactcattttcgttcaacgagagttaactcacgttgaaaa 593  Q
    ||||||||||| ||||||||||| |||||  ||||||||| |||||||||    
T  12341823 catctgttttttctcattttcgtccaacgtaagttaactcgcgttgaaaa 12341774  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 544 - 613
Target Start/End: Original strand, 28992377 - 28992446
Alignment:
Q  544 catctgtttttactcattttcgttcaacgagagttaactcacgttgaaaaatgcacctatgtgagttaac 613  Q
    ||||||||||||||||||  |  || ||| ||||||||||||| |||||||| ||| || ||||||||||    
T  28992377 catctgtttttactcattccctctctacgtgagttaactcacgctgaaaaatacacatacgtgagttaac 28992446  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000004; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 568 - 613
Target Start/End: Complemental strand, 42096828 - 42096783
Alignment:
Q  568 caacgagagttaactcacgttgaaaaatgcacctatgtgagttaac 613  Q
    ||||| ||||||||||||| ||||||||||||||||||||||||||    
T  42096828 caacgtgagttaactcacgctgaaaaatgcacctatgtgagttaac 42096783  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 614 - 652
Target Start/End: Complemental strand, 42096759 - 42096721
Alignment:
Q  614 gagttaactcacgttcaatttttctacgagaacgagcaa 652  Q
    |||||||||||||||| | ||||||||||||||||||||    
T  42096759 gagttaactcacgttcgacttttctacgagaacgagcaa 42096721  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 547 - 612
Target Start/End: Original strand, 24254639 - 24254704
Alignment:
Q  547 ctgtttttactcattttcgttcaacgagagttaactcacgttgaaaaatgcacctatgtgagttaa 612  Q
    |||||| | |||||| |||| |||||  | |||||||||||||||||||||| ||| |||||||||    
T  24254639 ctgtttgtgctcattctcgtccaacgtaaattaactcacgttgaaaaatgcatctacgtgagttaa 24254704  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000003; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 575 - 613
Target Start/End: Complemental strand, 54788232 - 54788194
Alignment:
Q  575 agttaactcacgttgaaaaatgcacctatgtgagttaac 613  Q
    ||||||||||||||||||||||||||||||||| |||||    
T  54788232 agttaactcacgttgaaaaatgcacctatgtgaattaac 54788194  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 538 - 596
Target Start/End: Complemental strand, 27788906 - 27788848
Alignment:
Q  538 ttatctcatctgtttttactcattttcgttcaacgagagttaactcacgttgaaaaatg 596  Q
    ||||| |||||||||||  |||||| ||| |||||||| |||| |||||||||||||||    
T  27788906 ttatcccatctgtttttgttcatttccgtccaacgagaattaaatcacgttgaaaaatg 27788848  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 568 - 613
Target Start/End: Original strand, 7238909 - 7238954
Alignment:
Q  568 caacgagagttaactcacgttgaaaaatgcacctatgtgagttaac 613  Q
    ||||| || |||||||||||||||||||||||||| |||| |||||    
T  7238909 caacgtgatttaactcacgttgaaaaatgcacctacgtgacttaac 7238954  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000003; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 551 - 613
Target Start/End: Original strand, 31847645 - 31847707
Alignment:
Q  551 ttttactcattttcgttcaacgagagttaactcacgttgaaaaatgcacctatgtgagttaac 613  Q
    |||||||||||||||| ||||  ||||||||||||  |||||||| || ||||||||||||||    
T  31847645 ttttactcattttcgtccaacatgagttaactcacagtgaaaaatacatctatgtgagttaac 31847707  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 548 - 613
Target Start/End: Original strand, 622857 - 622922
Alignment:
Q  548 tgtttttactcattttcgttcaacgagagttaactcacgttgaaaaatgcacctatgtgagttaac 613  Q
    ||||||| ||||||  ||| | ||| |||||||||||||||||||||| |||||| ||||||||||    
T  622857 tgtttttgctcattcccgtcctacgtgagttaactcacgttgaaaaatacacctacgtgagttaac 622922  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 647 - 680
Target Start/End: Original strand, 27541289 - 27541322
Alignment:
Q  647 gagcaaaaacagatggaagaagaacaattatcta 680  Q
    ||||||||||||||||||||||||||||| ||||    
T  27541289 gagcaaaaacagatggaagaagaacaattctcta 27541322  T

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Target: chr2 (Bit Score: 34; Significance: 0.000000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 544 - 613
Target Start/End: Complemental strand, 8514076 - 8514007
Alignment:
Q  544 catctgtttttactcattttcgttcaacgagagttaactcacgttgaaaaatgcacctatgtgagttaac 613  Q
    ||||||||||| ||||||| ||| | ||| ||||||| | |||||||||||| |||||| ||||||||||    
T  8514076 catctgtttttgctcatttccgtactacgtgagttaaattacgttgaaaaatacacctacgtgagttaac 8514007  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 551 - 602
Target Start/End: Complemental strand, 22296917 - 22296866
Alignment:
Q  551 ttttactcattttcgttcaacgagagttaactcacgttgaaaaatgcaccta 602  Q
    |||| ||||||| |||||||||  | ||||||||||||||||||||||||||    
T  22296917 ttttgctcatttccgttcaacgtaacttaactcacgttgaaaaatgcaccta 22296866  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 546 - 593
Target Start/End: Original strand, 32016360 - 32016407
Alignment:
Q  546 tctgtttttactcattttcgttcaacgagagttaactcacgttgaaaa 593  Q
    |||||||||||||||| || ||||||  ||||||||||||||||||||    
T  32016360 tctgtttttactcattctcattcaacatgagttaactcacgttgaaaa 32016407  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 543 - 585
Target Start/End: Complemental strand, 31195681 - 31195639
Alignment:
Q  543 tcatctgtttttactcattttcgttcaacgagagttaactcac 585  Q
    |||||||||||||||||||| ||||||||| ||||||| ||||    
T  31195681 tcatctgtttttactcatttccgttcaacgcgagttaattcac 31195639  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 544 - 613
Target Start/End: Complemental strand, 5995253 - 5995184
Alignment:
Q  544 catctgtttttactcattttcgttcaacgagagttaactcacgttgaaaaatgcacctatgtgagttaac 613  Q
    ||||| ||||| ||||||   |||||||| ||||||||||||| |||||||| ||| |||| ||||||||    
T  5995253 catctttttttgctcattcatgttcaacgtgagttaactcacgctgaaaaatacacatatgcgagttaac 5995184  T

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