View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18453_high_60 (Length: 237)
Name: NF18453_high_60
Description: NF18453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18453_high_60 |
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Alignment Details
Target: chr3 (Bit Score: 175; Significance: 2e-94; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 20 - 218
Target Start/End: Original strand, 41954611 - 41954809
Alignment:
| Q |
20 |
tgtgacaactatttgattgttttgtggtggtggctcgggtggtggtcgcatcgacgtaagggaaagcttggcggcggctcgtggttgagaaagaagatct |
119 |
Q |
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| T |
41954611 |
tgtgacaactgtttgattgttttgtggtggtggctcgggtggtggtcgcatcgacggaagagaaagcttggcggcggctcgtggttgagaaagaagatct |
41954710 |
T |
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| Q |
120 |
ctggcgagtgagaaaggttctggtaaaggatgaagagataattgaggggaaaggaggatgctcctactacaagaggagggaaataccaccaaagaggtg |
218 |
Q |
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| T |
41954711 |
ctggtgagtgagaaaggttctggtaaaggatgaagagataattgaggggaaaggaagatgctcctactacaagaggagggaaataccaccaaaaaggtg |
41954809 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 134; Significance: 7e-70; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 21 - 218
Target Start/End: Complemental strand, 35706855 - 35706658
Alignment:
| Q |
21 |
gtgacaactatttgattgttttgtggtggtggctcgggtggtggtcgcatcgacgtaagggaaagcttggcggcggctcgtggttgagaaagaagatctc |
120 |
Q |
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| T |
35706855 |
gtgacagccatttgattgttttgtggtggtggctcgggtggtggtcgcatcggtagaaaggaaagcttggcggtggctcgtggttgagaaagaagatctc |
35706756 |
T |
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| Q |
121 |
tggcgagtgagaaaggttctggtaaaggatgaagagataattgaggggaaaggaggatgctcctactacaagaggagggaaataccaccaaagaggtg |
218 |
Q |
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| T |
35706755 |
tggtgagtgagaaagattctggaaaagaatgaagagatagttgaggggaaaggagggtgctcctgctacaagaggaaggaaataccaccaaagaggtg |
35706658 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 21 - 218
Target Start/End: Original strand, 11789305 - 11789502
Alignment:
| Q |
21 |
gtgacaactatttgattgttttgtggtggtggctcgggtggtggtcgcatcgacgtaagggaaagcttggcggcggctcgtggttgagaaagaagatctc |
120 |
Q |
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| T |
11789305 |
gtgacaaccatttgattgttttgttgtggtggctcgggtggtggtcgcatcggcgggaaggaaagcttggcggcacctggtagtggggaagaaagatctt |
11789404 |
T |
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| Q |
121 |
tggcgagtgagaaaggttctggtaaaggatgaagagataattgaggggaaaggaggatgctcctactacaagaggagggaaataccaccaaagaggtg |
218 |
Q |
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| T |
11789405 |
tggtgagtgagaaagaaaatggaaaaggatgaagagatagttgaggggaaaggaggatgctcctactacaagaggagggaaataccaccaaagaggtg |
11789502 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 21 - 218
Target Start/End: Original strand, 7202592 - 7202786
Alignment:
| Q |
21 |
gtgacaactatttgattgttttgtggtggtggctcgggtggtggtcgcatcgacgtaagggaaagcttggcggcggctcgtggttgagaaagaagatctc |
120 |
Q |
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| T |
7202592 |
gtgacagccatttgattgttttgtggtggtggctcgggggacggtcgcatcggcgaaaaggaaggtttcgcgacgactcgtggtagagaaagaagatatg |
7202691 |
T |
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| Q |
121 |
tggcgagtgagaaaggttctggtaaaggatgaagagataattgaggggaaaggaggatgctcctactacaagaggagggaaataccaccaaagaggtg |
218 |
Q |
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| T |
7202692 |
ta---agtgagaaaggatctggaaaaggatgtagagatagttgaggggaaaggatgatgctcctactacaataggagggaaataccaccaaagaggtg |
7202786 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 88; Significance: 2e-42; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 23 - 218
Target Start/End: Original strand, 30401806 - 30402001
Alignment:
| Q |
23 |
gacaactatttgattgttttgtggtggtggctcgggtggtggtcgcatcgacgtaagggaaagcttggcggcggctcgtggttgagaaagaagatctctg |
122 |
Q |
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|||||| |||| |||||||||||||||||||||||||||||||| ||| | || || |||| ||| |||||||||||||| ||||||| ||||| | |
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| T |
30401806 |
gacaaccatttcattgttttgtggtggtggctcgggtggtggtcacataggcggaaaggaagacttagcggcggctcgtggcggagaaaggagatcatcg |
30401905 |
T |
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| Q |
123 |
gcgagtgagaaaggttctggtaaaggatgaagagataattgaggggaaaggaggatgctcctactacaagaggagggaaataccaccaaagaggtg |
218 |
Q |
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| T |
30401906 |
gtgagtgagaaaaattctagaaaaggatgaagagatagatgagtggaaatgacgatgctcctaccacaagaggagggaaataccaccaaagaggtg |
30402001 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 39 - 218
Target Start/End: Complemental strand, 36136923 - 36136747
Alignment:
| Q |
39 |
ttttgtggtggtggctcgggtggtggtcgcatcgacgtaagggaaagcttggcggcggctcgtggttgagaaagaagatctctggcgagtgagaaaggtt |
138 |
Q |
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|||||||||||||||||||||||||||||||||| || ||| ||| ||||||| | | ||| |||| ||||||| |||||||||| | |||| |||| || |
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| T |
36136923 |
ttttgtggtggtggctcgggtggtggtcgcatcggcggaagagaaggcttggcagtgactcatggtggagaaaggagatctctggtgtgtgaaaaagatt |
36136824 |
T |
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| Q |
139 |
ctggtaaaggatgaagagataattgaggggaaaggaggatgctcctactacaagaggagggaaataccaccaaagaggtg |
218 |
Q |
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|| |||||||||||||||| ||||||| ||||||||| |||| |||||| ||||||| | |||||||||||||||| |
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| T |
36136823 |
atgaaaaaggatgaagagatagttgagggaaaaggagga---tcctcctacaaaaggaggggagtaccaccaaagaggtg |
36136747 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 79; Significance: 5e-37; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 44 - 218
Target Start/End: Complemental strand, 2545476 - 2545302
Alignment:
| Q |
44 |
tggtggtggctcgggtggtggtcgcatcgacgtaagggaaagcttggcggcggctcgtggttgagaaagaagatctctggcgagtgagaaaggttctggt |
143 |
Q |
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| T |
2545476 |
tggtggtggttcgggtggtggtcgcataggcggaaaggaagacttagcgacggctcgtggtggagaaaggagatcattggtgagtgagaaaaattctaga |
2545377 |
T |
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| Q |
144 |
aaaggatgaagagataattgaggggaaaggaggatgctcctactacaagaggagggaaataccaccaaagaggtg |
218 |
Q |
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|||||||||||||||| |||||||||| || |||||||| ||||||||||||||||||||||||| |||||||| |
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| T |
2545376 |
aaaggatgaagagatagatgaggggaaatgaagatgctcccactacaagaggagggaaataccaccgaagaggtg |
2545302 |
T |
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